miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 8541 0.66 0.583507
Target:  5'- cGCCGUCGCgagGuACGaaaauccugugggaCGUgGugGCCGGg -3'
miRNA:   3'- -CGGCAGUGa--CuUGC--------------GCGgCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 40126 0.66 0.585646
Target:  5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3'
miRNA:   3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5'
17070 3' -58 NC_004333.2 + 15356 0.66 0.586716
Target:  5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3'
miRNA:   3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5'
17070 3' -58 NC_004333.2 + 48094 0.66 0.586716
Target:  5'- cGCCcaaCACgccaGAGCGCGCgGgcaagccagaacGCGCCGAu -3'
miRNA:   3'- -CGGca-GUGa---CUUGCGCGgC------------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28303 0.66 0.586716
Target:  5'- cGCgCGUCACggucacguGACGCGCCcgGACGCg-- -3'
miRNA:   3'- -CG-GCAGUGac------UUGCGCGG--CUGCGgcu -5'
17070 3' -58 NC_004333.2 + 23836 0.66 0.586716
Target:  5'- uGCCGuUCGCgcaGAACGacuCGUCGcGCGUCGAg -3'
miRNA:   3'- -CGGC-AGUGa--CUUGC---GCGGC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3842 0.66 0.586716
Target:  5'- gGCCGaUCA--GAACGCcacGUCGACGCUGu -3'
miRNA:   3'- -CGGC-AGUgaCUUGCG---CGGCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 37339 0.66 0.586716
Target:  5'- -aCGUCGaucgGAAagaGCGCCG-CGCCGu -3'
miRNA:   3'- cgGCAGUga--CUUg--CGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 27236 0.66 0.565391
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 41795 0.66 0.565391
Target:  5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3'
miRNA:   3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 19154 0.66 0.576032
Target:  5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3'
miRNA:   3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 10965 0.66 0.576032
Target:  5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3'
miRNA:   3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 4600 0.67 0.513104
Target:  5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3'
miRNA:   3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 17695 0.67 0.502875
Target:  5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3'
miRNA:   3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 19793 0.67 0.502875
Target:  5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3'
miRNA:   3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3291 0.67 0.492736
Target:  5'- cGgCGUCAUcgGGGCGgGCgGcGCGCCGGg -3'
miRNA:   3'- -CgGCAGUGa-CUUGCgCGgC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25280 0.67 0.492736
Target:  5'- -gCGUCGCgg---GCGUCGACGUCGAg -3'
miRNA:   3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.