Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 44418 | 0.67 | 0.513104 |
Target: 5'- uGCCGggcUCGCUGGcugguGCGUGCgaGGCGCuCGGc -3' miRNA: 3'- -CGGC---AGUGACU-----UGCGCGg-CUGCG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 8951 | 0.67 | 0.510026 |
Target: 5'- cGCUGUCcaucgcgugcgcggGCUGGaucgugggccguGCGCGgCGGCGaCCGAc -3' miRNA: 3'- -CGGCAG--------------UGACU------------UGCGCgGCUGC-GGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 4600 | 0.67 | 0.513104 |
Target: 5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3' miRNA: 3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 32610 | 0.67 | 0.513104 |
Target: 5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3' miRNA: 3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 40742 | 0.67 | 0.513104 |
Target: 5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3' miRNA: 3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17695 | 0.67 | 0.502875 |
Target: 5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3' miRNA: 3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 3291 | 0.67 | 0.492736 |
Target: 5'- cGgCGUCAUcgGGGCGgGCgGcGCGCCGGg -3' miRNA: 3'- -CgGCAGUGa-CUUGCgCGgC-UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25280 | 0.67 | 0.492736 |
Target: 5'- -gCGUCGCgg---GCGUCGACGUCGAg -3' miRNA: 3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 9019 | 0.67 | 0.482692 |
Target: 5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3' miRNA: 3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19793 | 0.67 | 0.502875 |
Target: 5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3' miRNA: 3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 41393 | 0.67 | 0.481694 |
Target: 5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3' miRNA: 3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 9421 | 0.67 | 0.472748 |
Target: 5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3' miRNA: 3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 27676 | 0.67 | 0.47176 |
Target: 5'- aGUCGcgCAcCUGAACGCGCUgcagcgaGACGUCGu -3' miRNA: 3'- -CGGCa-GU-GACUUGCGCGG-------CUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 12747 | 0.67 | 0.472748 |
Target: 5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3' miRNA: 3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 30841 | 0.67 | 0.472748 |
Target: 5'- -gCGUCGuaGAACGCGUCGAgCGCCu- -3' miRNA: 3'- cgGCAGUgaCUUGCGCGGCU-GCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 9029 | 0.68 | 0.428412 |
Target: 5'- gGCgCGcUCGCUGccuuuggcgaccugcGACaCGUCGACGCCGAu -3' miRNA: 3'- -CG-GC-AGUGAC---------------UUGcGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17415 | 0.68 | 0.423741 |
Target: 5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3' miRNA: 3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 39811 | 0.68 | 0.443559 |
Target: 5'- gGCCGUC-C-GAACGCGCauaccCGGCuGCCGu -3' miRNA: 3'- -CGGCAGuGaCUUGCGCG-----GCUG-CGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 43297 | 0.68 | 0.415412 |
Target: 5'- gGCCGgcuaugCGCUcgugccGAuCGaGCCGACGCCGGa -3' miRNA: 3'- -CGGCa-----GUGA------CUuGCgCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 28230 | 0.68 | 0.452211 |
Target: 5'- gGCgCGUCACggUGAccgugacGCGCGCgCGGCGCUc- -3' miRNA: 3'- -CG-GCAGUG--ACU-------UGCGCG-GCUGCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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