Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 12381 | 0.69 | 0.379638 |
Target: 5'- cGCgCGagGCUG-GCGCGCagGACGCCGc -3' miRNA: 3'- -CG-GCagUGACuUGCGCGg-CUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38473 | 0.69 | 0.388386 |
Target: 5'- cGCCGUC-UUGAcCGUgGCCGGCGUCa- -3' miRNA: 3'- -CGGCAGuGACUuGCG-CGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 28991 | 0.69 | 0.388386 |
Target: 5'- cGCCGcuacgCACcGAcggcaaguAUGCGCCGgccuGCGCCGAg -3' miRNA: 3'- -CGGCa----GUGaCU--------UGCGCGGC----UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 6782 | 0.69 | 0.406275 |
Target: 5'- aGCCGaUCGCauacGAcaGCGCGCCGAucuuCGCCu- -3' miRNA: 3'- -CGGC-AGUGa---CU--UGCGCGGCU----GCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 48024 | 0.69 | 0.397266 |
Target: 5'- cGCCGaCGaccAGCGCGCCGAgcagcuUGCCGAa -3' miRNA: 3'- -CGGCaGUgacUUGCGCGGCU------GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19717 | 0.69 | 0.388386 |
Target: 5'- uGCuCGgCGCUGGugGCGUgcaagaCGGCGCCGc -3' miRNA: 3'- -CG-GCaGUGACUugCGCG------GCUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17623 | 0.69 | 0.397266 |
Target: 5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3' miRNA: 3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 29960 | 0.69 | 0.406275 |
Target: 5'- aGCgCGU-GCcGAGCGCGgccgcgcugccaCCGGCGCCGAg -3' miRNA: 3'- -CG-GCAgUGaCUUGCGC------------GGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 8678 | 0.7 | 0.354196 |
Target: 5'- uGCCGUCggcguucagcACggcGAACGUGCCGAccgugaCGCCGc -3' miRNA: 3'- -CGGCAG----------UGa--CUUGCGCGGCU------GCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 13738 | 0.7 | 0.345986 |
Target: 5'- uGCCGUUGaagucGAGCGCGUagGACGCCGc -3' miRNA: 3'- -CGGCAGUga---CUUGCGCGg-CUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19616 | 0.7 | 0.344361 |
Target: 5'- --gGUCACggcgagcgcggcGAGCGCgGCCGACGCUGGc -3' miRNA: 3'- cggCAGUGa-----------CUUGCG-CGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 24748 | 0.7 | 0.337915 |
Target: 5'- aGCCGcUCAC-GAACGCGgCGACGaUCGc -3' miRNA: 3'- -CGGC-AGUGaCUUGCGCgGCUGC-GGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20554 | 0.7 | 0.322185 |
Target: 5'- gGCCGcgcCGCUGAucgucgGCGCGUCGggucGCGCCGu -3' miRNA: 3'- -CGGCa--GUGACU------UGCGCGGC----UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 30207 | 0.7 | 0.322185 |
Target: 5'- uGCCGUgauagcCGCUGccugaucgaucGACGCGCCG-CGCgCGAu -3' miRNA: 3'- -CGGCA------GUGAC-----------UUGCGCGGCuGCG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 18527 | 0.7 | 0.354196 |
Target: 5'- uGCCGgguugCGCgaacuuuuUGAACGCGCucgcgguguCGACGCCGc -3' miRNA: 3'- -CGGCa----GUG--------ACUUGCGCG---------GCUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 9707 | 0.7 | 0.354196 |
Target: 5'- aGCCGggCGCagGcGCGcCGCCGGCaGCCGGu -3' miRNA: 3'- -CGGCa-GUGa-CuUGC-GCGGCUG-CGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 11289 | 0.71 | 0.314528 |
Target: 5'- uGCCGcgCGCuguUGAACuGCGCCGuCGCCu- -3' miRNA: 3'- -CGGCa-GUG---ACUUG-CGCGGCuGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 10843 | 0.71 | 0.292386 |
Target: 5'- gGCCGcaaguaCGCUGucACGCGCuUGACGCCGc -3' miRNA: 3'- -CGGCa-----GUGACu-UGCGCG-GCUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19564 | 0.71 | 0.285281 |
Target: 5'- cGCCGcCA----GCGCGCCaGCGCCGAu -3' miRNA: 3'- -CGGCaGUgacuUGCGCGGcUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 31168 | 0.71 | 0.278312 |
Target: 5'- -gCGcCGCUG-ACGgGCCaGGCGCCGAa -3' miRNA: 3'- cgGCaGUGACuUGCgCGG-CUGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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