miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 45512 0.74 0.199735
Target:  5'- gGCCGcCAUgcucgcGAAUGCGCCGuCGCCGc -3'
miRNA:   3'- -CGGCaGUGa-----CUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 3073 0.73 0.227392
Target:  5'- -aCGUCGCggcGGACGCGCCGGCGagCGu -3'
miRNA:   3'- cgGCAGUGa--CUUGCGCGGCUGCg-GCu -5'
17070 3' -58 NC_004333.2 + 30065 0.73 0.221613
Target:  5'- cGCCG-CAUggUGcuCGCGCuCGGCGCCGGu -3'
miRNA:   3'- -CGGCaGUG--ACuuGCGCG-GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 4879 0.73 0.204488
Target:  5'- uGCCGcCGCUGAccauguagcGCGCGCUGcgauaguGCGCCGu -3'
miRNA:   3'- -CGGCaGUGACU---------UGCGCGGC-------UGCGGCu -5'
17070 3' -58 NC_004333.2 + 6595 0.73 0.205022
Target:  5'- cGCCGcCACg--GCGCGCCGcccaGCGCCGc -3'
miRNA:   3'- -CGGCaGUGacuUGCGCGGC----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 22955 0.73 0.214843
Target:  5'- uGCuCGUCACgagcgccaguacGAuCGCGCCGAuCGCCGGg -3'
miRNA:   3'- -CG-GCAGUGa-----------CUuGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 19914 0.73 0.210429
Target:  5'- cGCCGUCcgcaucaucgACgacGAGCGCGCCGgGCGgCGAg -3'
miRNA:   3'- -CGGCAG----------UGa--CUUGCGCGGC-UGCgGCU- -5'
17070 3' -58 NC_004333.2 + 26648 0.73 0.210429
Target:  5'- cGCCGcUCgugaGCgUGAuCGCGCCGGCuGCCGAu -3'
miRNA:   3'- -CGGC-AG----UG-ACUuGCGCGGCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 25294 0.72 0.251794
Target:  5'- cGgCGUCGCaac-CGgGCCGACGCCGGc -3'
miRNA:   3'- -CgGCAGUGacuuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 21015 0.72 0.251794
Target:  5'- aGCCGUCAC-GGGCGaCGaaGugGCCGc -3'
miRNA:   3'- -CGGCAGUGaCUUGC-GCggCugCGGCu -5'
17070 3' -58 NC_004333.2 + 2482 0.72 0.270805
Target:  5'- cGCUGcCGCUGuACGgcgaccaggcgacCGCCGGCGCCGu -3'
miRNA:   3'- -CGGCaGUGACuUGC-------------GCGGCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 784 0.72 0.251794
Target:  5'- aGCCcuUCGaccUUGAGCGUGCCGGuCGCCGGc -3'
miRNA:   3'- -CGGc-AGU---GACUUGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 261 0.72 0.243017
Target:  5'- aGCCGgcgggcgcacgggCAgUGGAcuCGCGCCaGGCGCCGAu -3'
miRNA:   3'- -CGGCa------------GUgACUU--GCGCGG-CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 11621 0.72 0.264784
Target:  5'- gGCCGUCACUucgcgcgcGAACGUGUCGaaguaGCGCUGc -3'
miRNA:   3'- -CGGCAGUGA--------CUUGCGCGGC-----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 6671 0.72 0.271481
Target:  5'- uGCgG-CGCUGGgcgGCGCGCCGugGCggCGAu -3'
miRNA:   3'- -CGgCaGUGACU---UGCGCGGCugCG--GCU- -5'
17070 3' -58 NC_004333.2 + 11903 0.72 0.239333
Target:  5'- aCCGgcgcaaGCUgGAGCGCGCCGucGCGCUGAu -3'
miRNA:   3'- cGGCag----UGA-CUUGCGCGGC--UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28936 0.72 0.239333
Target:  5'- gGCaCGagCGCuUGAGCGCGCCGGCuaCGAa -3'
miRNA:   3'- -CG-GCa-GUG-ACUUGCGCGGCUGcgGCU- -5'
17070 3' -58 NC_004333.2 + 30306 0.72 0.271481
Target:  5'- -aCG-CACUGAuCGCGCgCGGCGCgCGAu -3'
miRNA:   3'- cgGCaGUGACUuGCGCG-GCUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 8250 0.72 0.271481
Target:  5'- cGCCGcUCACUGAguACGCGaUgGACgcgGCCGAc -3'
miRNA:   3'- -CGGC-AGUGACU--UGCGC-GgCUG---CGGCU- -5'
17070 3' -58 NC_004333.2 + 25479 0.71 0.314528
Target:  5'- cGCCGgcaCGCUGcaGGCGCGCU--CGCCGGa -3'
miRNA:   3'- -CGGCa--GUGAC--UUGCGCGGcuGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.