Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 48024 | 0.69 | 0.397266 |
Target: 5'- cGCCGaCGaccAGCGCGCCGAgcagcuUGCCGAa -3' miRNA: 3'- -CGGCaGUgacUUGCGCGGCU------GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 4841 | 0.69 | 0.371022 |
Target: 5'- --aGUCgGCUGAccguacgcGCGCGCCG-UGCCGAu -3' miRNA: 3'- cggCAG-UGACU--------UGCGCGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 28991 | 0.69 | 0.388386 |
Target: 5'- cGCCGcuacgCACcGAcggcaaguAUGCGCCGgccuGCGCCGAg -3' miRNA: 3'- -CGGCa----GUGaCU--------UGCGCGGC----UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38473 | 0.69 | 0.388386 |
Target: 5'- cGCCGUC-UUGAcCGUgGCCGGCGUCa- -3' miRNA: 3'- -CGGCAGuGACUuGCG-CGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38693 | 0.69 | 0.379638 |
Target: 5'- cGCCG-CGCUGAaauucccgcaGC-CGCCGGCGCUc- -3' miRNA: 3'- -CGGCaGUGACU----------UGcGCGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19717 | 0.69 | 0.388386 |
Target: 5'- uGCuCGgCGCUGGugGCGUgcaagaCGGCGCCGc -3' miRNA: 3'- -CG-GCaGUGACUugCGCG------GCUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17623 | 0.69 | 0.397266 |
Target: 5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3' miRNA: 3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 12381 | 0.69 | 0.379638 |
Target: 5'- cGCgCGagGCUG-GCGCGCagGACGCCGc -3' miRNA: 3'- -CG-GCagUGACuUGCGCGg-CUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 6782 | 0.69 | 0.406275 |
Target: 5'- aGCCGaUCGCauacGAcaGCGCGCCGAucuuCGCCu- -3' miRNA: 3'- -CGGC-AGUGa---CU--UGCGCGGCU----GCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 31174 | 0.69 | 0.406275 |
Target: 5'- cGCCGcC-CaGAcgGCGCGCCGuacucgacaACGCCGAc -3' miRNA: 3'- -CGGCaGuGaCU--UGCGCGGC---------UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19499 | 0.69 | 0.371022 |
Target: 5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3' miRNA: 3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 46189 | 0.69 | 0.371022 |
Target: 5'- aCCGaggGCUGGGCGCGUCucGCGCCGGa -3' miRNA: 3'- cGGCag-UGACUUGCGCGGc-UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 32255 | 0.68 | 0.459978 |
Target: 5'- cGUCGUC-CUGAaccucggcgaguaaGCGCgugGCCGGCcuGCCGAc -3' miRNA: 3'- -CGGCAGuGACU--------------UGCG---CGGCUG--CGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 36183 | 0.68 | 0.421881 |
Target: 5'- gGCCGUCGCcaaccuugcguacgUGGcugGCGCGCa-GCGCCGc -3' miRNA: 3'- -CGGCAGUG--------------ACU---UGCGCGgcUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 7504 | 0.68 | 0.434056 |
Target: 5'- gGCCGUCucgugcagcuCUGG--GCGCCGcGCGUCGAa -3' miRNA: 3'- -CGGCAGu---------GACUugCGCGGC-UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 30491 | 0.68 | 0.453178 |
Target: 5'- gGCaGUCGCUacGGCGCGCgaauucggucCGGCGCCGGu -3' miRNA: 3'- -CGgCAGUGAc-UUGCGCG----------GCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20755 | 0.68 | 0.415412 |
Target: 5'- cGCCGaCGCggcuGCGCGCCuGAaCGUCGAc -3' miRNA: 3'- -CGGCaGUGacu-UGCGCGG-CU-GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 32538 | 0.68 | 0.415412 |
Target: 5'- -aCGUCGCgcGGCGCGCUcGCGUCGAu -3' miRNA: 3'- cgGCAGUGacUUGCGCGGcUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 43297 | 0.68 | 0.415412 |
Target: 5'- gGCCGgcuaugCGCUcgugccGAuCGaGCCGACGCCGGa -3' miRNA: 3'- -CGGCa-----GUGA------CUuGCgCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17415 | 0.68 | 0.423741 |
Target: 5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3' miRNA: 3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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