miRNA display CGI


Results 81 - 100 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 36183 0.68 0.421881
Target:  5'- gGCCGUCGCcaaccuugcguacgUGGcugGCGCGCa-GCGCCGc -3'
miRNA:   3'- -CGGCAGUG--------------ACU---UGCGCGgcUGCGGCu -5'
17070 3' -58 NC_004333.2 + 46321 0.68 0.453178
Target:  5'- cUCGUCgaagaucgACUGAACGaGCgGGCGCCGu -3'
miRNA:   3'- cGGCAG--------UGACUUGCgCGgCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 39811 0.68 0.443559
Target:  5'- gGCCGUC-C-GAACGCGCauaccCGGCuGCCGu -3'
miRNA:   3'- -CGGCAGuGaCUUGCGCG-----GCUG-CGGCu -5'
17070 3' -58 NC_004333.2 + 23221 0.68 0.462909
Target:  5'- cGCCGUCuugaucacgGCggcGAACGCGCCGGuCGUg-- -3'
miRNA:   3'- -CGGCAG---------UGa--CUUGCGCGGCU-GCGgcu -5'
17070 3' -58 NC_004333.2 + 32538 0.68 0.415412
Target:  5'- -aCGUCGCgcGGCGCGCUcGCGUCGAu -3'
miRNA:   3'- cgGCAGUGacUUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 9029 0.68 0.428412
Target:  5'- gGCgCGcUCGCUGccuuuggcgaccugcGACaCGUCGACGCCGAu -3'
miRNA:   3'- -CG-GC-AGUGAC---------------UUGcGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32320 0.68 0.462909
Target:  5'- gGUCgGUCAC-GAGCGCGUgcaCGGCuGCCGGg -3'
miRNA:   3'- -CGG-CAGUGaCUUGCGCG---GCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 43297 0.68 0.415412
Target:  5'- gGCCGgcuaugCGCUcgugccGAuCGaGCCGACGCCGGa -3'
miRNA:   3'- -CGGCa-----GUGA------CUuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 17415 0.68 0.423741
Target:  5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3'
miRNA:   3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5'
17070 3' -58 NC_004333.2 + 15353 0.68 0.424673
Target:  5'- cUCGgCGCaGAcgcGCGCGCUGAaCGCCGAa -3'
miRNA:   3'- cGGCaGUGaCU---UGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 45030 0.68 0.462909
Target:  5'- cGCgCGUggCGCUGGcgGCGCGCaaACGCUGAa -3'
miRNA:   3'- -CG-GCA--GUGACU--UGCGCGgcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 17695 0.67 0.502875
Target:  5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3'
miRNA:   3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 3291 0.67 0.492736
Target:  5'- cGgCGUCAUcgGGGCGgGCgGcGCGCCGGg -3'
miRNA:   3'- -CgGCAGUGa-CUUGCgCGgC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 25280 0.67 0.492736
Target:  5'- -gCGUCGCgg---GCGUCGACGUCGAg -3'
miRNA:   3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19793 0.67 0.502875
Target:  5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3'
miRNA:   3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 40742 0.67 0.513104
Target:  5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3'
miRNA:   3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.