miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5'
17070 3' -58 NC_004333.2 + 27676 0.67 0.47176
Target:  5'- aGUCGcgCAcCUGAACGCGCUgcagcgaGACGUCGu -3'
miRNA:   3'- -CGGCa-GU-GACUUGCGCGG-------CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 30680 0.67 0.492736
Target:  5'- aGCCGUU------CGCGCCGcCGCCGGc -3'
miRNA:   3'- -CGGCAGugacuuGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 4600 0.67 0.513104
Target:  5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3'
miRNA:   3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30841 0.67 0.472748
Target:  5'- -gCGUCGuaGAACGCGUCGAgCGCCu- -3'
miRNA:   3'- cgGCAGUgaCUUGCGCGGCU-GCGGcu -5'
17070 3' -58 NC_004333.2 + 2673 0.67 0.502875
Target:  5'- cGCCGgcaGCUugcagcguCGCGCCGGCGgCGGc -3'
miRNA:   3'- -CGGCag-UGAcuu-----GCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 13895 0.67 0.513104
Target:  5'- gGCCGgCACgGGcuGCGCGgCGGCuGCCGu -3'
miRNA:   3'- -CGGCaGUGaCU--UGCGCgGCUG-CGGCu -5'
17070 3' -58 NC_004333.2 + 29418 0.67 0.523416
Target:  5'- cGCCGUCGCg----GCGCUGGCuGCCc- -3'
miRNA:   3'- -CGGCAGUGacuugCGCGGCUG-CGGcu -5'
17070 3' -58 NC_004333.2 + 8951 0.67 0.510026
Target:  5'- cGCUGUCcaucgcgugcgcggGCUGGaucgugggccguGCGCGgCGGCGaCCGAc -3'
miRNA:   3'- -CGGCAG--------------UGACU------------UGCGCgGCUGC-GGCU- -5'
17070 3' -58 NC_004333.2 + 37433 0.67 0.492736
Target:  5'- uGCaCGUgUACUGcGGCGUGacgaaCGGCGCCGAc -3'
miRNA:   3'- -CG-GCA-GUGAC-UUGCGCg----GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 44418 0.67 0.513104
Target:  5'- uGCCGggcUCGCUGGcugguGCGUGCgaGGCGCuCGGc -3'
miRNA:   3'- -CGGC---AGUGACU-----UGCGCGg-CUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 8417 0.67 0.523416
Target:  5'- -aCGUCGCcGAuACGgugcCGCCGACGuuGAu -3'
miRNA:   3'- cgGCAGUGaCU-UGC----GCGGCUGCggCU- -5'
17070 3' -58 NC_004333.2 + 18783 0.67 0.472748
Target:  5'- cGCCaUCGCUGAAcCGCGCUuauCGCgCGGc -3'
miRNA:   3'- -CGGcAGUGACUU-GCGCGGcu-GCG-GCU- -5'
17070 3' -58 NC_004333.2 + 3792 0.66 0.586716
Target:  5'- gGCCuUCGCgaucuGCGCaGCgGACGCUGGa -3'
miRNA:   3'- -CGGcAGUGacu--UGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 27236 0.66 0.565391
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 41795 0.66 0.565391
Target:  5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3'
miRNA:   3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 19154 0.66 0.576032
Target:  5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3'
miRNA:   3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 10965 0.66 0.576032
Target:  5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3'
miRNA:   3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 15356 0.66 0.586716
Target:  5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3'
miRNA:   3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.