Results 121 - 140 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 25056 | 0.66 | 0.533808 |
Target: 5'- cGCCGUagUUGAuCGCGCUGuCGCUGc -3' miRNA: 3'- -CGGCAguGACUuGCGCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 27550 | 0.66 | 0.533808 |
Target: 5'- cGCCGgggcgaaucugcgCAUUGAACaGCGaaguaaaggugaugcCCGACGUCGAa -3' miRNA: 3'- -CGGCa------------GUGACUUG-CGC---------------GGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20663 | 0.66 | 0.544272 |
Target: 5'- cGCCaGUgGCaGGAgGCGCacgggauGACGCCGGa -3' miRNA: 3'- -CGG-CAgUGaCUUgCGCGg------CUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 28409 | 0.66 | 0.544272 |
Target: 5'- cGCCGcaaUCGC--AACGUGUCG-CGCCGGu -3' miRNA: 3'- -CGGC---AGUGacUUGCGCGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 44926 | 0.66 | 0.554802 |
Target: 5'- -gCGUCGC---GCGCGCCGAagaaGUCGGc -3' miRNA: 3'- cgGCAGUGacuUGCGCGGCUg---CGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25184 | 0.66 | 0.554802 |
Target: 5'- cGCCGcgucucgaacUCGCU--GCGCGaCuCGACGUCGAc -3' miRNA: 3'- -CGGC----------AGUGAcuUGCGC-G-GCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 40126 | 0.66 | 0.585646 |
Target: 5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3' miRNA: 3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 8541 | 0.66 | 0.583507 |
Target: 5'- cGCCGUCGCgagGuACGaaaauccugugggaCGUgGugGCCGGg -3' miRNA: 3'- -CGGCAGUGa--CuUGC--------------GCGgCugCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 3792 | 0.66 | 0.586716 |
Target: 5'- gGCCuUCGCgaucuGCGCaGCgGACGCUGGa -3' miRNA: 3'- -CGGcAGUGacu--UGCG-CGgCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 32477 | 0.66 | 0.554802 |
Target: 5'- aGCUG-CGCgagGcGCGgGCCGACaCCGAg -3' miRNA: 3'- -CGGCaGUGa--CuUGCgCGGCUGcGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38620 | 0.66 | 0.565391 |
Target: 5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3' miRNA: 3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 37592 | 0.66 | 0.565391 |
Target: 5'- aCCGgaacgACUGAucuucACGUgGCCGugGCCGGc -3' miRNA: 3'- cGGCag---UGACU-----UGCG-CGGCugCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 27236 | 0.66 | 0.565391 |
Target: 5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3' miRNA: 3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 41795 | 0.66 | 0.565391 |
Target: 5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3' miRNA: 3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19154 | 0.66 | 0.576032 |
Target: 5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3' miRNA: 3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 10965 | 0.66 | 0.576032 |
Target: 5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3' miRNA: 3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 30848 | 0.66 | 0.576032 |
Target: 5'- cGUCGUCAU--GACGguCGCCG-CGCCGu -3' miRNA: 3'- -CGGCAGUGacUUGC--GCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 31393 | 0.66 | 0.554802 |
Target: 5'- gGCCGgCAUUGcGgGCGCCGugcucgGCGUCGGc -3' miRNA: 3'- -CGGCaGUGACuUgCGCGGC------UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25391 | 0.66 | 0.576032 |
Target: 5'- aCCGUUACgu-ACGUcgcggcagucGCCGGCGUCGGc -3' miRNA: 3'- cGGCAGUGacuUGCG----------CGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 26021 | 0.66 | 0.576032 |
Target: 5'- cGCCGcgUACUGGcCGCcgGCauCGACGCCGc -3' miRNA: 3'- -CGGCa-GUGACUuGCG--CG--GCUGCGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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