miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 42492 0.71 0.285281
Target:  5'- aGCCG-CGCUG-AUGCGCUGACGaucauCGAa -3'
miRNA:   3'- -CGGCaGUGACuUGCGCGGCUGCg----GCU- -5'
17070 3' -58 NC_004333.2 + 39401 0.71 0.285281
Target:  5'- -gCGUCGuaGaAGCGCGCCGcCGCCGAg -3'
miRNA:   3'- cgGCAGUgaC-UUGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19564 0.71 0.285281
Target:  5'- cGCCGcCA----GCGCGCCaGCGCCGAu -3'
miRNA:   3'- -CGGCaGUgacuUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 10843 0.71 0.292386
Target:  5'- gGCCGcaaguaCGCUGucACGCGCuUGACGCCGc -3'
miRNA:   3'- -CGGCa-----GUGACu-UGCGCG-GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 28924 0.71 0.292386
Target:  5'- uGCCGUCGgU--GCGUaGCgGGCGCCGAg -3'
miRNA:   3'- -CGGCAGUgAcuUGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 12557 0.71 0.299628
Target:  5'- uGCCGgcaaGCUGGACGCGaaugaCGAC-CCGGg -3'
miRNA:   3'- -CGGCag--UGACUUGCGCg----GCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 6729 0.71 0.299628
Target:  5'- cGCCu--GCUcGAGCGCGCCGAgcgcgcUGCCGAg -3'
miRNA:   3'- -CGGcagUGA-CUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 29817 0.71 0.299628
Target:  5'- gGCCGUUgauGCUGAucgcCGCGCCGccaGUCGAc -3'
miRNA:   3'- -CGGCAG---UGACUu---GCGCGGCug-CGGCU- -5'
17070 3' -58 NC_004333.2 + 11289 0.71 0.314528
Target:  5'- uGCCGcgCGCuguUGAACuGCGCCGuCGCCu- -3'
miRNA:   3'- -CGGCa-GUG---ACUUG-CGCGGCuGCGGcu -5'
17070 3' -58 NC_004333.2 + 25479 0.71 0.314528
Target:  5'- cGCCGgcaCGCUGcaGGCGCGCU--CGCCGGa -3'
miRNA:   3'- -CGGCa--GUGAC--UUGCGCGGcuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30207 0.7 0.322185
Target:  5'- uGCCGUgauagcCGCUGccugaucgaucGACGCGCCG-CGCgCGAu -3'
miRNA:   3'- -CGGCA------GUGAC-----------UUGCGCGGCuGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 20554 0.7 0.322185
Target:  5'- gGCCGcgcCGCUGAucgucgGCGCGUCGggucGCGCCGu -3'
miRNA:   3'- -CGGCa--GUGACU------UGCGCGGC----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 24748 0.7 0.337915
Target:  5'- aGCCGcUCAC-GAACGCGgCGACGaUCGc -3'
miRNA:   3'- -CGGC-AGUGaCUUGCGCgGCUGC-GGCu -5'
17070 3' -58 NC_004333.2 + 19616 0.7 0.344361
Target:  5'- --gGUCACggcgagcgcggcGAGCGCgGCCGACGCUGGc -3'
miRNA:   3'- cggCAGUGa-----------CUUGCG-CGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 13738 0.7 0.345986
Target:  5'- uGCCGUUGaagucGAGCGCGUagGACGCCGc -3'
miRNA:   3'- -CGGCAGUga---CUUGCGCGg-CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 8678 0.7 0.354196
Target:  5'- uGCCGUCggcguucagcACggcGAACGUGCCGAccgugaCGCCGc -3'
miRNA:   3'- -CGGCAG----------UGa--CUUGCGCGGCU------GCGGCu -5'
17070 3' -58 NC_004333.2 + 18527 0.7 0.354196
Target:  5'- uGCCGgguugCGCgaacuuuuUGAACGCGCucgcgguguCGACGCCGc -3'
miRNA:   3'- -CGGCa----GUG--------ACUUGCGCG---------GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 9707 0.7 0.354196
Target:  5'- aGCCGggCGCagGcGCGcCGCCGGCaGCCGGu -3'
miRNA:   3'- -CGGCa-GUGa-CuUGC-GCGGCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 4841 0.69 0.371022
Target:  5'- --aGUCgGCUGAccguacgcGCGCGCCG-UGCCGAu -3'
miRNA:   3'- cggCAG-UGACU--------UGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19499 0.69 0.371022
Target:  5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3'
miRNA:   3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.