miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 4841 0.69 0.371022
Target:  5'- --aGUCgGCUGAccguacgcGCGCGCCG-UGCCGAu -3'
miRNA:   3'- cggCAG-UGACU--------UGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19499 0.69 0.371022
Target:  5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3'
miRNA:   3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5'
17070 3' -58 NC_004333.2 + 38693 0.69 0.379638
Target:  5'- cGCCG-CGCUGAaauucccgcaGC-CGCCGGCGCUc- -3'
miRNA:   3'- -CGGCaGUGACU----------UGcGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 12381 0.69 0.379638
Target:  5'- cGCgCGagGCUG-GCGCGCagGACGCCGc -3'
miRNA:   3'- -CG-GCagUGACuUGCGCGg-CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 28991 0.69 0.388386
Target:  5'- cGCCGcuacgCACcGAcggcaaguAUGCGCCGgccuGCGCCGAg -3'
miRNA:   3'- -CGGCa----GUGaCU--------UGCGCGGC----UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 38473 0.69 0.388386
Target:  5'- cGCCGUC-UUGAcCGUgGCCGGCGUCa- -3'
miRNA:   3'- -CGGCAGuGACUuGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 19717 0.69 0.388386
Target:  5'- uGCuCGgCGCUGGugGCGUgcaagaCGGCGCCGc -3'
miRNA:   3'- -CG-GCaGUGACUugCGCG------GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 48024 0.69 0.397266
Target:  5'- cGCCGaCGaccAGCGCGCCGAgcagcuUGCCGAa -3'
miRNA:   3'- -CGGCaGUgacUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 17623 0.69 0.397266
Target:  5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3'
miRNA:   3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 31174 0.69 0.406275
Target:  5'- cGCCGcC-CaGAcgGCGCGCCGuacucgacaACGCCGAc -3'
miRNA:   3'- -CGGCaGuGaCU--UGCGCGGC---------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 29960 0.69 0.406275
Target:  5'- aGCgCGU-GCcGAGCGCGgccgcgcugccaCCGGCGCCGAg -3'
miRNA:   3'- -CG-GCAgUGaCUUGCGC------------GGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 6782 0.69 0.406275
Target:  5'- aGCCGaUCGCauacGAcaGCGCGCCGAucuuCGCCu- -3'
miRNA:   3'- -CGGC-AGUGa---CU--UGCGCGGCU----GCGGcu -5'
17070 3' -58 NC_004333.2 + 20755 0.68 0.415412
Target:  5'- cGCCGaCGCggcuGCGCGCCuGAaCGUCGAc -3'
miRNA:   3'- -CGGCaGUGacu-UGCGCGG-CU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 32538 0.68 0.415412
Target:  5'- -aCGUCGCgcGGCGCGCUcGCGUCGAu -3'
miRNA:   3'- cgGCAGUGacUUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 43297 0.68 0.415412
Target:  5'- gGCCGgcuaugCGCUcgugccGAuCGaGCCGACGCCGGa -3'
miRNA:   3'- -CGGCa-----GUGA------CUuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 36183 0.68 0.421881
Target:  5'- gGCCGUCGCcaaccuugcguacgUGGcugGCGCGCa-GCGCCGc -3'
miRNA:   3'- -CGGCAGUG--------------ACU---UGCGCGgcUGCGGCu -5'
17070 3' -58 NC_004333.2 + 9451 0.68 0.423741
Target:  5'- cGCCGUC-CUGcgcaccaGGCGCGggugccgcaCCGcCGCCGAg -3'
miRNA:   3'- -CGGCAGuGAC-------UUGCGC---------GGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 17415 0.68 0.423741
Target:  5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3'
miRNA:   3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5'
17070 3' -58 NC_004333.2 + 15353 0.68 0.424673
Target:  5'- cUCGgCGCaGAcgcGCGCGCUGAaCGCCGAa -3'
miRNA:   3'- cGGCaGUGaCU---UGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9029 0.68 0.428412
Target:  5'- gGCgCGcUCGCUGccuuuggcgaccugcGACaCGUCGACGCCGAu -3'
miRNA:   3'- -CG-GC-AGUGAC---------------UUGcGCGGCUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.