miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 30680 0.67 0.492736
Target:  5'- aGCCGUU------CGCGCCGcCGCCGGc -3'
miRNA:   3'- -CGGCAGugacuuGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 37433 0.67 0.492736
Target:  5'- uGCaCGUgUACUGcGGCGUGacgaaCGGCGCCGAc -3'
miRNA:   3'- -CG-GCA-GUGAC-UUGCGCg----GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 17695 0.67 0.502875
Target:  5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3'
miRNA:   3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 19793 0.67 0.502875
Target:  5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3'
miRNA:   3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 2673 0.67 0.502875
Target:  5'- cGCCGgcaGCUugcagcguCGCGCCGGCGgCGGc -3'
miRNA:   3'- -CGGCag-UGAcuu-----GCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 8951 0.67 0.510026
Target:  5'- cGCUGUCcaucgcgugcgcggGCUGGaucgugggccguGCGCGgCGGCGaCCGAc -3'
miRNA:   3'- -CGGCAG--------------UGACU------------UGCGCgGCUGC-GGCU- -5'
17070 3' -58 NC_004333.2 + 4600 0.67 0.513104
Target:  5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3'
miRNA:   3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 44418 0.67 0.513104
Target:  5'- uGCCGggcUCGCUGGcugguGCGUGCgaGGCGCuCGGc -3'
miRNA:   3'- -CGGC---AGUGACU-----UGCGCGg-CUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 13895 0.67 0.513104
Target:  5'- gGCCGgCACgGGcuGCGCGgCGGCuGCCGu -3'
miRNA:   3'- -CGGCaGUGaCU--UGCGCgGCUG-CGGCu -5'
17070 3' -58 NC_004333.2 + 32610 0.67 0.513104
Target:  5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3'
miRNA:   3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 40742 0.67 0.513104
Target:  5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3'
miRNA:   3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 29418 0.67 0.523416
Target:  5'- cGCCGUCGCg----GCGCUGGCuGCCc- -3'
miRNA:   3'- -CGGCAGUGacuugCGCGGCUG-CGGcu -5'
17070 3' -58 NC_004333.2 + 14504 0.67 0.523416
Target:  5'- gGCCGUCcUUGAACGuCGCau-CGCaCGAc -3'
miRNA:   3'- -CGGCAGuGACUUGC-GCGgcuGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 8417 0.67 0.523416
Target:  5'- -aCGUCGCcGAuACGgugcCGCCGACGuuGAu -3'
miRNA:   3'- cgGCAGUGaCU-UGC----GCGGCUGCggCU- -5'
17070 3' -58 NC_004333.2 + 25056 0.66 0.533808
Target:  5'- cGCCGUagUUGAuCGCGCUGuCGCUGc -3'
miRNA:   3'- -CGGCAguGACUuGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 27550 0.66 0.533808
Target:  5'- cGCCGgggcgaaucugcgCAUUGAACaGCGaaguaaaggugaugcCCGACGUCGAa -3'
miRNA:   3'- -CGGCa------------GUGACUUG-CGC---------------GGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3200 0.66 0.533808
Target:  5'- gGCCGgugaGCcGGcccgGCGCGCCGcccgccccgaugACGCCGGg -3'
miRNA:   3'- -CGGCag--UGaCU----UGCGCGGC------------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 20663 0.66 0.544272
Target:  5'- cGCCaGUgGCaGGAgGCGCacgggauGACGCCGGa -3'
miRNA:   3'- -CGG-CAgUGaCUUgCGCGg------CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28409 0.66 0.544272
Target:  5'- cGCCGcaaUCGC--AACGUGUCG-CGCCGGu -3'
miRNA:   3'- -CGGC---AGUGacUUGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32477 0.66 0.554802
Target:  5'- aGCUG-CGCgagGcGCGgGCCGACaCCGAg -3'
miRNA:   3'- -CGGCaGUGa--CuUGCgCGGCUGcGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.