miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 46321 0.68 0.453178
Target:  5'- cUCGUCgaagaucgACUGAACGaGCgGGCGCCGu -3'
miRNA:   3'- cGGCAG--------UGACUUGCgCGgCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 28230 0.68 0.452211
Target:  5'- gGCgCGUCACggUGAccgugacGCGCGCgCGGCGCUc- -3'
miRNA:   3'- -CG-GCAGUG--ACU-------UGCGCG-GCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 39811 0.68 0.443559
Target:  5'- gGCCGUC-C-GAACGCGCauaccCGGCuGCCGu -3'
miRNA:   3'- -CGGCAGuGaCUUGCGCG-----GCUG-CGGCu -5'
17070 3' -58 NC_004333.2 + 20373 0.68 0.443559
Target:  5'- cGCCGUCGaaaaUGAA-GUuaagGCCGugGCCGc -3'
miRNA:   3'- -CGGCAGUg---ACUUgCG----CGGCugCGGCu -5'
17070 3' -58 NC_004333.2 + 47448 0.68 0.434056
Target:  5'- uCCGUUcgacgcaucgACUaGcAACGCGCCGGCGgCGAc -3'
miRNA:   3'- cGGCAG----------UGA-C-UUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 7504 0.68 0.434056
Target:  5'- gGCCGUCucgugcagcuCUGG--GCGCCGcGCGUCGAa -3'
miRNA:   3'- -CGGCAGu---------GACUugCGCGGC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 9029 0.68 0.428412
Target:  5'- gGCgCGcUCGCUGccuuuggcgaccugcGACaCGUCGACGCCGAu -3'
miRNA:   3'- -CG-GC-AGUGAC---------------UUGcGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 15353 0.68 0.424673
Target:  5'- cUCGgCGCaGAcgcGCGCGCUGAaCGCCGAa -3'
miRNA:   3'- cGGCaGUGaCU---UGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 17415 0.68 0.423741
Target:  5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3'
miRNA:   3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5'
17070 3' -58 NC_004333.2 + 9451 0.68 0.423741
Target:  5'- cGCCGUC-CUGcgcaccaGGCGCGggugccgcaCCGcCGCCGAg -3'
miRNA:   3'- -CGGCAGuGAC-------UUGCGC---------GGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 36183 0.68 0.421881
Target:  5'- gGCCGUCGCcaaccuugcguacgUGGcugGCGCGCa-GCGCCGc -3'
miRNA:   3'- -CGGCAGUG--------------ACU---UGCGCGgcUGCGGCu -5'
17070 3' -58 NC_004333.2 + 20755 0.68 0.415412
Target:  5'- cGCCGaCGCggcuGCGCGCCuGAaCGUCGAc -3'
miRNA:   3'- -CGGCaGUGacu-UGCGCGG-CU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 43297 0.68 0.415412
Target:  5'- gGCCGgcuaugCGCUcgugccGAuCGaGCCGACGCCGGa -3'
miRNA:   3'- -CGGCa-----GUGA------CUuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32538 0.68 0.415412
Target:  5'- -aCGUCGCgcGGCGCGCUcGCGUCGAu -3'
miRNA:   3'- cgGCAGUGacUUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 29960 0.69 0.406275
Target:  5'- aGCgCGU-GCcGAGCGCGgccgcgcugccaCCGGCGCCGAg -3'
miRNA:   3'- -CG-GCAgUGaCUUGCGC------------GGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 6782 0.69 0.406275
Target:  5'- aGCCGaUCGCauacGAcaGCGCGCCGAucuuCGCCu- -3'
miRNA:   3'- -CGGC-AGUGa---CU--UGCGCGGCU----GCGGcu -5'
17070 3' -58 NC_004333.2 + 31174 0.69 0.406275
Target:  5'- cGCCGcC-CaGAcgGCGCGCCGuacucgacaACGCCGAc -3'
miRNA:   3'- -CGGCaGuGaCU--UGCGCGGC---------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 48024 0.69 0.397266
Target:  5'- cGCCGaCGaccAGCGCGCCGAgcagcuUGCCGAa -3'
miRNA:   3'- -CGGCaGUgacUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 17623 0.69 0.397266
Target:  5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3'
miRNA:   3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 19717 0.69 0.388386
Target:  5'- uGCuCGgCGCUGGugGCGUgcaagaCGGCGCCGc -3'
miRNA:   3'- -CG-GCaGUGACUugCGCG------GCUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.