Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 13738 | 0.7 | 0.345986 |
Target: 5'- uGCCGUUGaagucGAGCGCGUagGACGCCGc -3' miRNA: 3'- -CGGCAGUga---CUUGCGCGg-CUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 13853 | 0.79 | 0.083516 |
Target: 5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3' miRNA: 3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 13895 | 0.67 | 0.513104 |
Target: 5'- gGCCGgCACgGGcuGCGCGgCGGCuGCCGu -3' miRNA: 3'- -CGGCaGUGaCU--UGCGCgGCUG-CGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14325 | 0.74 | 0.189518 |
Target: 5'- uGCCGcCGCUGGcucgaaagagGCGCGCgCGcACGCCGu -3' miRNA: 3'- -CGGCaGUGACU----------UGCGCG-GC-UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14504 | 0.67 | 0.523416 |
Target: 5'- gGCCGUCcUUGAACGuCGCau-CGCaCGAc -3' miRNA: 3'- -CGGCAGuGACUUGC-GCGgcuGCG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14921 | 0.75 | 0.170455 |
Target: 5'- aGCCGUC-CUGGACGacCGCCGagaGCGCCu- -3' miRNA: 3'- -CGGCAGuGACUUGC--GCGGC---UGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14998 | 0.75 | 0.161581 |
Target: 5'- aGCCGguuaGC-GGGC-CGCCGACGCCGAc -3' miRNA: 3'- -CGGCag--UGaCUUGcGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 15353 | 0.68 | 0.424673 |
Target: 5'- cUCGgCGCaGAcgcGCGCGCUGAaCGCCGAa -3' miRNA: 3'- cGGCaGUGaCU---UGCGCGGCU-GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 15356 | 0.66 | 0.586716 |
Target: 5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3' miRNA: 3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 15801 | 0.66 | 0.565391 |
Target: 5'- cUCGaaGCguucGAuCGCGCCGACGCCu- -3' miRNA: 3'- cGGCagUGa---CUuGCGCGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17415 | 0.68 | 0.423741 |
Target: 5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3' miRNA: 3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17623 | 0.69 | 0.397266 |
Target: 5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3' miRNA: 3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17695 | 0.67 | 0.502875 |
Target: 5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3' miRNA: 3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 18527 | 0.7 | 0.354196 |
Target: 5'- uGCCGgguugCGCgaacuuuuUGAACGCGCucgcgguguCGACGCCGc -3' miRNA: 3'- -CGGCa----GUG--------ACUUGCGCG---------GCUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 18783 | 0.67 | 0.472748 |
Target: 5'- cGCCaUCGCUGAAcCGCGCUuauCGCgCGGc -3' miRNA: 3'- -CGGcAGUGACUU-GCGCGGcu-GCG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19154 | 0.66 | 0.576032 |
Target: 5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3' miRNA: 3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19499 | 0.69 | 0.371022 |
Target: 5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3' miRNA: 3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19564 | 0.71 | 0.285281 |
Target: 5'- cGCCGcCA----GCGCGCCaGCGCCGAu -3' miRNA: 3'- -CGGCaGUgacuUGCGCGGcUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19616 | 0.7 | 0.344361 |
Target: 5'- --gGUCACggcgagcgcggcGAGCGCgGCCGACGCUGGc -3' miRNA: 3'- cggCAGUGa-----------CUUGCG-CGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19717 | 0.69 | 0.388386 |
Target: 5'- uGCuCGgCGCUGGugGCGUgcaagaCGGCGCCGc -3' miRNA: 3'- -CG-GCaGUGACUugCGCG------GCUGCGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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