Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 19793 | 0.67 | 0.502875 |
Target: 5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3' miRNA: 3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19914 | 0.73 | 0.210429 |
Target: 5'- cGCCGUCcgcaucaucgACgacGAGCGCGCCGgGCGgCGAg -3' miRNA: 3'- -CGGCAG----------UGa--CUUGCGCGGC-UGCgGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20373 | 0.68 | 0.443559 |
Target: 5'- cGCCGUCGaaaaUGAA-GUuaagGCCGugGCCGc -3' miRNA: 3'- -CGGCAGUg---ACUUgCG----CGGCugCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20554 | 0.7 | 0.322185 |
Target: 5'- gGCCGcgcCGCUGAucgucgGCGCGUCGggucGCGCCGu -3' miRNA: 3'- -CGGCa--GUGACU------UGCGCGGC----UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20663 | 0.66 | 0.544272 |
Target: 5'- cGCCaGUgGCaGGAgGCGCacgggauGACGCCGGa -3' miRNA: 3'- -CGG-CAgUGaCUUgCGCGg------CUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20755 | 0.68 | 0.415412 |
Target: 5'- cGCCGaCGCggcuGCGCGCCuGAaCGUCGAc -3' miRNA: 3'- -CGGCaGUGacu-UGCGCGG-CU-GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 21015 | 0.72 | 0.251794 |
Target: 5'- aGCCGUCAC-GGGCGaCGaaGugGCCGc -3' miRNA: 3'- -CGGCAGUGaCUUGC-GCggCugCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 22075 | 0.77 | 0.113429 |
Target: 5'- cCCGcgCGCUGAuuCGCGCCGACGCaaaGAa -3' miRNA: 3'- cGGCa-GUGACUu-GCGCGGCUGCGg--CU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 22955 | 0.73 | 0.214843 |
Target: 5'- uGCuCGUCACgagcgccaguacGAuCGCGCCGAuCGCCGGg -3' miRNA: 3'- -CG-GCAGUGa-----------CUuGCGCGGCU-GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 23221 | 0.68 | 0.462909 |
Target: 5'- cGCCGUCuugaucacgGCggcGAACGCGCCGGuCGUg-- -3' miRNA: 3'- -CGGCAG---------UGa--CUUGCGCGGCU-GCGgcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 23557 | 0.75 | 0.154784 |
Target: 5'- aGCUGUCGC-GAACGCauugucgaaagcgaaGCCGcCGCCGAg -3' miRNA: 3'- -CGGCAGUGaCUUGCG---------------CGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 23836 | 0.66 | 0.586716 |
Target: 5'- uGCCGuUCGCgcaGAACGacuCGUCGcGCGUCGAg -3' miRNA: 3'- -CGGC-AGUGa--CUUGC---GCGGC-UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 24748 | 0.7 | 0.337915 |
Target: 5'- aGCCGcUCAC-GAACGCGgCGACGaUCGc -3' miRNA: 3'- -CGGC-AGUGaCUUGCGCgGCUGC-GGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25056 | 0.66 | 0.533808 |
Target: 5'- cGCCGUagUUGAuCGCGCUGuCGCUGc -3' miRNA: 3'- -CGGCAguGACUuGCGCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25184 | 0.66 | 0.554802 |
Target: 5'- cGCCGcgucucgaacUCGCU--GCGCGaCuCGACGUCGAc -3' miRNA: 3'- -CGGC----------AGUGAcuUGCGC-G-GCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25280 | 0.67 | 0.492736 |
Target: 5'- -gCGUCGCgg---GCGUCGACGUCGAg -3' miRNA: 3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25294 | 0.72 | 0.251794 |
Target: 5'- cGgCGUCGCaac-CGgGCCGACGCCGGc -3' miRNA: 3'- -CgGCAGUGacuuGCgCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25391 | 0.66 | 0.576032 |
Target: 5'- aCCGUUACgu-ACGUcgcggcagucGCCGGCGUCGGc -3' miRNA: 3'- cGGCAGUGacuUGCG----------CGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25435 | 0.75 | 0.175054 |
Target: 5'- gGCCGUCACgccGGGCGUGCCGguuACGaCGAc -3' miRNA: 3'- -CGGCAGUGa--CUUGCGCGGC---UGCgGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25479 | 0.71 | 0.314528 |
Target: 5'- cGCCGgcaCGCUGcaGGCGCGCU--CGCCGGa -3' miRNA: 3'- -CGGCa--GUGAC--UUGCGCGGcuGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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