miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 25672 0.76 0.130118
Target:  5'- gGCCGUCGC-GAACGCGgCGAC-CUGAu -3'
miRNA:   3'- -CGGCAGUGaCUUGCGCgGCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 26021 0.66 0.576032
Target:  5'- cGCCGcgUACUGGcCGCcgGCauCGACGCCGc -3'
miRNA:   3'- -CGGCa-GUGACUuGCG--CG--GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 26648 0.73 0.210429
Target:  5'- cGCCGcUCgugaGCgUGAuCGCGCCGGCuGCCGAu -3'
miRNA:   3'- -CGGC-AG----UG-ACUuGCGCGGCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 27228 0.76 0.149049
Target:  5'- cGCCGUCGugaucgcagcguCUGccUGCGCCGACGCCu- -3'
miRNA:   3'- -CGGCAGU------------GACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 27236 0.66 0.565391
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 27550 0.66 0.533808
Target:  5'- cGCCGgggcgaaucugcgCAUUGAACaGCGaaguaaaggugaugcCCGACGUCGAa -3'
miRNA:   3'- -CGGCa------------GUGACUUG-CGC---------------GGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 27676 0.67 0.47176
Target:  5'- aGUCGcgCAcCUGAACGCGCUgcagcgaGACGUCGu -3'
miRNA:   3'- -CGGCa-GU-GACUUGCGCGG-------CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 28230 0.68 0.452211
Target:  5'- gGCgCGUCACggUGAccgugacGCGCGCgCGGCGCUc- -3'
miRNA:   3'- -CG-GCAGUG--ACU-------UGCGCG-GCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 28303 0.66 0.586716
Target:  5'- cGCgCGUCACggucacguGACGCGCCcgGACGCg-- -3'
miRNA:   3'- -CG-GCAGUGac------UUGCGCGG--CUGCGgcu -5'
17070 3' -58 NC_004333.2 + 28409 0.66 0.544272
Target:  5'- cGCCGcaaUCGC--AACGUGUCG-CGCCGGu -3'
miRNA:   3'- -CGGC---AGUGacUUGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28924 0.71 0.292386
Target:  5'- uGCCGUCGgU--GCGUaGCgGGCGCCGAg -3'
miRNA:   3'- -CGGCAGUgAcuUGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28936 0.72 0.239333
Target:  5'- gGCaCGagCGCuUGAGCGCGCCGGCuaCGAa -3'
miRNA:   3'- -CG-GCa-GUG-ACUUGCGCGGCUGcgGCU- -5'
17070 3' -58 NC_004333.2 + 28991 0.69 0.388386
Target:  5'- cGCCGcuacgCACcGAcggcaaguAUGCGCCGgccuGCGCCGAg -3'
miRNA:   3'- -CGGCa----GUGaCU--------UGCGCGGC----UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 29418 0.67 0.523416
Target:  5'- cGCCGUCGCg----GCGCUGGCuGCCc- -3'
miRNA:   3'- -CGGCAGUGacuugCGCGGCUG-CGGcu -5'
17070 3' -58 NC_004333.2 + 29817 0.71 0.299628
Target:  5'- gGCCGUUgauGCUGAucgcCGCGCCGccaGUCGAc -3'
miRNA:   3'- -CGGCAG---UGACUu---GCGCGGCug-CGGCU- -5'
17070 3' -58 NC_004333.2 + 29960 0.69 0.406275
Target:  5'- aGCgCGU-GCcGAGCGCGgccgcgcugccaCCGGCGCCGAg -3'
miRNA:   3'- -CG-GCAgUGaCUUGCGC------------GGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30065 0.73 0.221613
Target:  5'- cGCCG-CAUggUGcuCGCGCuCGGCGCCGGu -3'
miRNA:   3'- -CGGCaGUG--ACuuGCGCG-GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30083 0.75 0.161581
Target:  5'- uGCCGUagCGCcgacgGAACGCGUCGAUGCgCGAc -3'
miRNA:   3'- -CGGCA--GUGa----CUUGCGCGGCUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 30207 0.7 0.322185
Target:  5'- uGCCGUgauagcCGCUGccugaucgaucGACGCGCCG-CGCgCGAu -3'
miRNA:   3'- -CGGCA------GUGAC-----------UUGCGCGGCuGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 30306 0.72 0.271481
Target:  5'- -aCG-CACUGAuCGCGCgCGGCGCgCGAu -3'
miRNA:   3'- cgGCaGUGACUuGCGCG-GCUGCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.