miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 30491 0.68 0.453178
Target:  5'- gGCaGUCGCUacGGCGCGCgaauucggucCGGCGCCGGu -3'
miRNA:   3'- -CGgCAGUGAc-UUGCGCG----------GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30680 0.67 0.492736
Target:  5'- aGCCGUU------CGCGCCGcCGCCGGc -3'
miRNA:   3'- -CGGCAGugacuuGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30841 0.67 0.472748
Target:  5'- -gCGUCGuaGAACGCGUCGAgCGCCu- -3'
miRNA:   3'- cgGCAGUgaCUUGCGCGGCU-GCGGcu -5'
17070 3' -58 NC_004333.2 + 30848 0.66 0.576032
Target:  5'- cGUCGUCAU--GACGguCGCCG-CGCCGu -3'
miRNA:   3'- -CGGCAGUGacUUGC--GCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 30907 0.66 0.586716
Target:  5'- -gCGUC---GAGCGCGUCGACGCUu- -3'
miRNA:   3'- cgGCAGugaCUUGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 31168 0.71 0.278312
Target:  5'- -gCGcCGCUG-ACGgGCCaGGCGCCGAa -3'
miRNA:   3'- cgGCaGUGACuUGCgCGG-CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 31174 0.69 0.406275
Target:  5'- cGCCGcC-CaGAcgGCGCGCCGuacucgacaACGCCGAc -3'
miRNA:   3'- -CGGCaGuGaCU--UGCGCGGC---------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 31301 0.77 0.11034
Target:  5'- gGCCG-CACc---UGCGCCGACGCCGAg -3'
miRNA:   3'- -CGGCaGUGacuuGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 31393 0.66 0.554802
Target:  5'- gGCCGgCAUUGcGgGCGCCGugcucgGCGUCGGc -3'
miRNA:   3'- -CGGCaGUGACuUgCGCGGC------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32168 1.1 0.000459
Target:  5'- uGCCGUCACUGAACGCGCCGACGCCGAu -3'
miRNA:   3'- -CGGCAGUGACUUGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32255 0.68 0.459978
Target:  5'- cGUCGUC-CUGAaccucggcgaguaaGCGCgugGCCGGCcuGCCGAc -3'
miRNA:   3'- -CGGCAGuGACU--------------UGCG---CGGCUG--CGGCU- -5'
17070 3' -58 NC_004333.2 + 32320 0.68 0.462909
Target:  5'- gGUCgGUCAC-GAGCGCGUgcaCGGCuGCCGGg -3'
miRNA:   3'- -CGG-CAGUGaCUUGCGCG---GCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 32477 0.66 0.554802
Target:  5'- aGCUG-CGCgagGcGCGgGCCGACaCCGAg -3'
miRNA:   3'- -CGGCaGUGa--CuUGCgCGGCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 32538 0.68 0.415412
Target:  5'- -aCGUCGCgcGGCGCGCUcGCGUCGAu -3'
miRNA:   3'- cgGCAGUGacUUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32610 0.67 0.513104
Target:  5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3'
miRNA:   3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 36183 0.68 0.421881
Target:  5'- gGCCGUCGCcaaccuugcguacgUGGcugGCGCGCa-GCGCCGc -3'
miRNA:   3'- -CGGCAGUG--------------ACU---UGCGCGgcUGCGGCu -5'
17070 3' -58 NC_004333.2 + 36822 0.66 0.576032
Target:  5'- uGCCGUCGagu-GCGCGCUacggccauCGCCGGc -3'
miRNA:   3'- -CGGCAGUgacuUGCGCGGcu------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 37187 0.8 0.07463
Target:  5'- cGCCGcUCACgacGCGCGCCGGUGCCGAg -3'
miRNA:   3'- -CGGC-AGUGacuUGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 37339 0.66 0.586716
Target:  5'- -aCGUCGaucgGAAagaGCGCCG-CGCCGu -3'
miRNA:   3'- cgGCAGUga--CUUg--CGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 37433 0.67 0.492736
Target:  5'- uGCaCGUgUACUGcGGCGUGacgaaCGGCGCCGAc -3'
miRNA:   3'- -CG-GCA-GUGAC-UUGCGCg----GCUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.