miRNA display CGI


Results 121 - 140 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 37592 0.66 0.565391
Target:  5'- aCCGgaacgACUGAucuucACGUgGCCGugGCCGGc -3'
miRNA:   3'- cGGCag---UGACU-----UGCG-CGGCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 38334 0.69 0.371022
Target:  5'- cGCC-UCGa-GGGCGUGCCGACcgaaGCCGAa -3'
miRNA:   3'- -CGGcAGUgaCUUGCGCGGCUG----CGGCU- -5'
17070 3' -58 NC_004333.2 + 38374 0.77 0.113429
Target:  5'- cGCUGUCGCgugucGggUGCGCCGgcgugACGCCGGc -3'
miRNA:   3'- -CGGCAGUGa----CuuGCGCGGC-----UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 38473 0.69 0.388386
Target:  5'- cGCCGUC-UUGAcCGUgGCCGGCGUCa- -3'
miRNA:   3'- -CGGCAGuGACUuGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 38620 0.66 0.565391
Target:  5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3'
miRNA:   3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5'
17070 3' -58 NC_004333.2 + 38693 0.69 0.379638
Target:  5'- cGCCG-CGCUGAaauucccgcaGC-CGCCGGCGCUc- -3'
miRNA:   3'- -CGGCaGUGACU----------UGcGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 39401 0.71 0.285281
Target:  5'- -gCGUCGuaGaAGCGCGCCGcCGCCGAg -3'
miRNA:   3'- cgGCAGUgaC-UUGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 39811 0.68 0.443559
Target:  5'- gGCCGUC-C-GAACGCGCauaccCGGCuGCCGu -3'
miRNA:   3'- -CGGCAGuGaCUUGCGCG-----GCUG-CGGCu -5'
17070 3' -58 NC_004333.2 + 40126 0.66 0.585646
Target:  5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3'
miRNA:   3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5'
17070 3' -58 NC_004333.2 + 40742 0.67 0.513104
Target:  5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3'
miRNA:   3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 41242 0.66 0.565391
Target:  5'- cGCCGUCGCUGcGCuuccCGCagauCGACaCCGAa -3'
miRNA:   3'- -CGGCAGUGACuUGc---GCG----GCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 41795 0.66 0.565391
Target:  5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3'
miRNA:   3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 42492 0.71 0.285281
Target:  5'- aGCCG-CGCUG-AUGCGCUGACGaucauCGAa -3'
miRNA:   3'- -CGGCaGUGACuUGCGCGGCUGCg----GCU- -5'
17070 3' -58 NC_004333.2 + 43297 0.68 0.415412
Target:  5'- gGCCGgcuaugCGCUcgugccGAuCGaGCCGACGCCGGa -3'
miRNA:   3'- -CGGCa-----GUGA------CUuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 44418 0.67 0.513104
Target:  5'- uGCCGggcUCGCUGGcugguGCGUGCgaGGCGCuCGGc -3'
miRNA:   3'- -CGGC---AGUGACU-----UGCGCGg-CUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 44926 0.66 0.554802
Target:  5'- -gCGUCGC---GCGCGCCGAagaaGUCGGc -3'
miRNA:   3'- cgGCAGUGacuUGCGCGGCUg---CGGCU- -5'
17070 3' -58 NC_004333.2 + 45030 0.68 0.462909
Target:  5'- cGCgCGUggCGCUGGcgGCGCGCaaACGCUGAa -3'
miRNA:   3'- -CG-GCA--GUGACU--UGCGCGgcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 45512 0.74 0.199735
Target:  5'- gGCCGcCAUgcucgcGAAUGCGCCGuCGCCGc -3'
miRNA:   3'- -CGGCaGUGa-----CUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 46189 0.69 0.371022
Target:  5'- aCCGaggGCUGGGCGCGUCucGCGCCGGa -3'
miRNA:   3'- cGGCag-UGACUUGCGCGGc-UGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.