Results 141 - 146 of 146 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 17070 | 3' | -58 | NC_004333.2 | + | 46321 | 0.68 | 0.453178 |
|
Target: 5'- cUCGUCgaagaucgACUGAACGaGCgGGCGCCGu -3' miRNA: 3'- cGGCAG--------UGACUUGCgCGgCUGCGGCu -5' |
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| 17070 | 3' | -58 | NC_004333.2 | + | 47448 | 0.68 | 0.434056 |
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Target: 5'- uCCGUUcgacgcaucgACUaGcAACGCGCCGGCGgCGAc -3' miRNA: 3'- cGGCAG----------UGA-C-UUGCGCGGCUGCgGCU- -5' |
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| 17070 | 3' | -58 | NC_004333.2 | + | 47487 | 0.74 | 0.179762 |
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Target: 5'- uGCCG-CGCUGAACgagGCGCCGGCcgGCgCGAc -3' miRNA: 3'- -CGGCaGUGACUUG---CGCGGCUG--CG-GCU- -5' |
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| 17070 | 3' | -58 | NC_004333.2 | + | 47721 | 0.76 | 0.130118 |
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Target: 5'- cGCCGgCACgucGCGCGCCGugGCCu- -3' miRNA: 3'- -CGGCaGUGacuUGCGCGGCugCGGcu -5' |
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| 17070 | 3' | -58 | NC_004333.2 | + | 48024 | 0.69 | 0.397266 |
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Target: 5'- cGCCGaCGaccAGCGCGCCGAgcagcuUGCCGAa -3' miRNA: 3'- -CGGCaGUgacUUGCGCGGCU------GCGGCU- -5' |
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| 17070 | 3' | -58 | NC_004333.2 | + | 48094 | 0.66 | 0.586716 |
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Target: 5'- cGCCcaaCACgccaGAGCGCGCgGgcaagccagaacGCGCCGAu -3' miRNA: 3'- -CGGca-GUGa---CUUGCGCGgC------------UGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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