miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 27550 0.66 0.533808
Target:  5'- cGCCGgggcgaaucugcgCAUUGAACaGCGaaguaaaggugaugcCCGACGUCGAa -3'
miRNA:   3'- -CGGCa------------GUGACUUG-CGC---------------GGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 27236 0.66 0.565391
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 27228 0.76 0.149049
Target:  5'- cGCCGUCGugaucgcagcguCUGccUGCGCCGACGCCu- -3'
miRNA:   3'- -CGGCAGU------------GACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 26648 0.73 0.210429
Target:  5'- cGCCGcUCgugaGCgUGAuCGCGCCGGCuGCCGAu -3'
miRNA:   3'- -CGGC-AG----UG-ACUuGCGCGGCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 26021 0.66 0.576032
Target:  5'- cGCCGcgUACUGGcCGCcgGCauCGACGCCGc -3'
miRNA:   3'- -CGGCa-GUGACUuGCG--CG--GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 25672 0.76 0.130118
Target:  5'- gGCCGUCGC-GAACGCGgCGAC-CUGAu -3'
miRNA:   3'- -CGGCAGUGaCUUGCGCgGCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 25479 0.71 0.314528
Target:  5'- cGCCGgcaCGCUGcaGGCGCGCU--CGCCGGa -3'
miRNA:   3'- -CGGCa--GUGAC--UUGCGCGGcuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25435 0.75 0.175054
Target:  5'- gGCCGUCACgccGGGCGUGCCGguuACGaCGAc -3'
miRNA:   3'- -CGGCAGUGa--CUUGCGCGGC---UGCgGCU- -5'
17070 3' -58 NC_004333.2 + 25391 0.66 0.576032
Target:  5'- aCCGUUACgu-ACGUcgcggcagucGCCGGCGUCGGc -3'
miRNA:   3'- cGGCAGUGacuUGCG----------CGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25294 0.72 0.251794
Target:  5'- cGgCGUCGCaac-CGgGCCGACGCCGGc -3'
miRNA:   3'- -CgGCAGUGacuuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25280 0.67 0.492736
Target:  5'- -gCGUCGCgg---GCGUCGACGUCGAg -3'
miRNA:   3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25184 0.66 0.554802
Target:  5'- cGCCGcgucucgaacUCGCU--GCGCGaCuCGACGUCGAc -3'
miRNA:   3'- -CGGC----------AGUGAcuUGCGC-G-GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25056 0.66 0.533808
Target:  5'- cGCCGUagUUGAuCGCGCUGuCGCUGc -3'
miRNA:   3'- -CGGCAguGACUuGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 24748 0.7 0.337915
Target:  5'- aGCCGcUCAC-GAACGCGgCGACGaUCGc -3'
miRNA:   3'- -CGGC-AGUGaCUUGCGCgGCUGC-GGCu -5'
17070 3' -58 NC_004333.2 + 23836 0.66 0.586716
Target:  5'- uGCCGuUCGCgcaGAACGacuCGUCGcGCGUCGAg -3'
miRNA:   3'- -CGGC-AGUGa--CUUGC---GCGGC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 23557 0.75 0.154784
Target:  5'- aGCUGUCGC-GAACGCauugucgaaagcgaaGCCGcCGCCGAg -3'
miRNA:   3'- -CGGCAGUGaCUUGCG---------------CGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 23221 0.68 0.462909
Target:  5'- cGCCGUCuugaucacgGCggcGAACGCGCCGGuCGUg-- -3'
miRNA:   3'- -CGGCAG---------UGa--CUUGCGCGGCU-GCGgcu -5'
17070 3' -58 NC_004333.2 + 22955 0.73 0.214843
Target:  5'- uGCuCGUCACgagcgccaguacGAuCGCGCCGAuCGCCGGg -3'
miRNA:   3'- -CG-GCAGUGa-----------CUuGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 22075 0.77 0.113429
Target:  5'- cCCGcgCGCUGAuuCGCGCCGACGCaaaGAa -3'
miRNA:   3'- cGGCa-GUGACUu-GCGCGGCUGCGg--CU- -5'
17070 3' -58 NC_004333.2 + 21015 0.72 0.251794
Target:  5'- aGCCGUCAC-GGGCGaCGaaGugGCCGc -3'
miRNA:   3'- -CGGCAGUGaCUUGC-GCggCugCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.