miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 20755 0.68 0.415412
Target:  5'- cGCCGaCGCggcuGCGCGCCuGAaCGUCGAc -3'
miRNA:   3'- -CGGCaGUGacu-UGCGCGG-CU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 20663 0.66 0.544272
Target:  5'- cGCCaGUgGCaGGAgGCGCacgggauGACGCCGGa -3'
miRNA:   3'- -CGG-CAgUGaCUUgCGCGg------CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 20554 0.7 0.322185
Target:  5'- gGCCGcgcCGCUGAucgucgGCGCGUCGggucGCGCCGu -3'
miRNA:   3'- -CGGCa--GUGACU------UGCGCGGC----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 20373 0.68 0.443559
Target:  5'- cGCCGUCGaaaaUGAA-GUuaagGCCGugGCCGc -3'
miRNA:   3'- -CGGCAGUg---ACUUgCG----CGGCugCGGCu -5'
17070 3' -58 NC_004333.2 + 19914 0.73 0.210429
Target:  5'- cGCCGUCcgcaucaucgACgacGAGCGCGCCGgGCGgCGAg -3'
miRNA:   3'- -CGGCAG----------UGa--CUUGCGCGGC-UGCgGCU- -5'
17070 3' -58 NC_004333.2 + 19793 0.67 0.502875
Target:  5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3'
miRNA:   3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19717 0.69 0.388386
Target:  5'- uGCuCGgCGCUGGugGCGUgcaagaCGGCGCCGc -3'
miRNA:   3'- -CG-GCaGUGACUugCGCG------GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 19616 0.7 0.344361
Target:  5'- --gGUCACggcgagcgcggcGAGCGCgGCCGACGCUGGc -3'
miRNA:   3'- cggCAGUGa-----------CUUGCG-CGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19564 0.71 0.285281
Target:  5'- cGCCGcCA----GCGCGCCaGCGCCGAu -3'
miRNA:   3'- -CGGCaGUgacuUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19499 0.69 0.371022
Target:  5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3'
miRNA:   3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5'
17070 3' -58 NC_004333.2 + 19154 0.66 0.576032
Target:  5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3'
miRNA:   3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 18783 0.67 0.472748
Target:  5'- cGCCaUCGCUGAAcCGCGCUuauCGCgCGGc -3'
miRNA:   3'- -CGGcAGUGACUU-GCGCGGcu-GCG-GCU- -5'
17070 3' -58 NC_004333.2 + 18527 0.7 0.354196
Target:  5'- uGCCGgguugCGCgaacuuuuUGAACGCGCucgcgguguCGACGCCGc -3'
miRNA:   3'- -CGGCa----GUG--------ACUUGCGCG---------GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 17695 0.67 0.502875
Target:  5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3'
miRNA:   3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 17623 0.69 0.397266
Target:  5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3'
miRNA:   3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 17415 0.68 0.423741
Target:  5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3'
miRNA:   3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5'
17070 3' -58 NC_004333.2 + 15801 0.66 0.565391
Target:  5'- cUCGaaGCguucGAuCGCGCCGACGCCu- -3'
miRNA:   3'- cGGCagUGa---CUuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 15356 0.66 0.586716
Target:  5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3'
miRNA:   3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5'
17070 3' -58 NC_004333.2 + 15353 0.68 0.424673
Target:  5'- cUCGgCGCaGAcgcGCGCGCUGAaCGCCGAa -3'
miRNA:   3'- cGGCaGUGaCU---UGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 14998 0.75 0.161581
Target:  5'- aGCCGguuaGC-GGGC-CGCCGACGCCGAc -3'
miRNA:   3'- -CGGCag--UGaCUUGcGCGGCUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.