miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 14921 0.75 0.170455
Target:  5'- aGCCGUC-CUGGACGacCGCCGagaGCGCCu- -3'
miRNA:   3'- -CGGCAGuGACUUGC--GCGGC---UGCGGcu -5'
17070 3' -58 NC_004333.2 + 14504 0.67 0.523416
Target:  5'- gGCCGUCcUUGAACGuCGCau-CGCaCGAc -3'
miRNA:   3'- -CGGCAGuGACUUGC-GCGgcuGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 14325 0.74 0.189518
Target:  5'- uGCCGcCGCUGGcucgaaagagGCGCGCgCGcACGCCGu -3'
miRNA:   3'- -CGGCaGUGACU----------UGCGCG-GC-UGCGGCu -5'
17070 3' -58 NC_004333.2 + 13895 0.67 0.513104
Target:  5'- gGCCGgCACgGGcuGCGCGgCGGCuGCCGu -3'
miRNA:   3'- -CGGCaGUGaCU--UGCGCgGCUG-CGGCu -5'
17070 3' -58 NC_004333.2 + 13853 0.79 0.083516
Target:  5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3'
miRNA:   3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 13738 0.7 0.345986
Target:  5'- uGCCGUUGaagucGAGCGCGUagGACGCCGc -3'
miRNA:   3'- -CGGCAGUga---CUUGCGCGg-CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5'
17070 3' -58 NC_004333.2 + 12557 0.71 0.299628
Target:  5'- uGCCGgcaaGCUGGACGCGaaugaCGAC-CCGGg -3'
miRNA:   3'- -CGGCag--UGACUUGCGCg----GCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 12381 0.69 0.379638
Target:  5'- cGCgCGagGCUG-GCGCGCagGACGCCGc -3'
miRNA:   3'- -CG-GCagUGACuUGCGCGg-CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 11903 0.72 0.239333
Target:  5'- aCCGgcgcaaGCUgGAGCGCGCCGucGCGCUGAu -3'
miRNA:   3'- cGGCag----UGA-CUUGCGCGGC--UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 11621 0.72 0.264784
Target:  5'- gGCCGUCACUucgcgcgcGAACGUGUCGaaguaGCGCUGc -3'
miRNA:   3'- -CGGCAGUGA--------CUUGCGCGGC-----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 11289 0.71 0.314528
Target:  5'- uGCCGcgCGCuguUGAACuGCGCCGuCGCCu- -3'
miRNA:   3'- -CGGCa-GUG---ACUUG-CGCGGCuGCGGcu -5'
17070 3' -58 NC_004333.2 + 10965 0.66 0.576032
Target:  5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3'
miRNA:   3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 10843 0.71 0.292386
Target:  5'- gGCCGcaaguaCGCUGucACGCGCuUGACGCCGc -3'
miRNA:   3'- -CGGCa-----GUGACu-UGCGCG-GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 9707 0.7 0.354196
Target:  5'- aGCCGggCGCagGcGCGcCGCCGGCaGCCGGu -3'
miRNA:   3'- -CGGCa-GUGa-CuUGC-GCGGCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 9451 0.68 0.423741
Target:  5'- cGCCGUC-CUGcgcaccaGGCGCGggugccgcaCCGcCGCCGAg -3'
miRNA:   3'- -CGGCAGuGAC-------UUGCGC---------GGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 9029 0.68 0.428412
Target:  5'- gGCgCGcUCGCUGccuuuggcgaccugcGACaCGUCGACGCCGAu -3'
miRNA:   3'- -CG-GC-AGUGAC---------------UUGcGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 8951 0.67 0.510026
Target:  5'- cGCUGUCcaucgcgugcgcggGCUGGaucgugggccguGCGCGgCGGCGaCCGAc -3'
miRNA:   3'- -CGGCAG--------------UGACU------------UGCGCgGCUGC-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.