Results 21 - 40 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 28924 | 0.71 | 0.292386 |
Target: 5'- uGCCGUCGgU--GCGUaGCgGGCGCCGAg -3' miRNA: 3'- -CGGCAGUgAcuUGCG-CGgCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 21015 | 0.72 | 0.251794 |
Target: 5'- aGCCGUCAC-GGGCGaCGaaGugGCCGc -3' miRNA: 3'- -CGGCAGUGaCUUGC-GCggCugCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14921 | 0.75 | 0.170455 |
Target: 5'- aGCCGUC-CUGGACGacCGCCGagaGCGCCu- -3' miRNA: 3'- -CGGCAGuGACUUGC--GCGGC---UGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38374 | 0.77 | 0.113429 |
Target: 5'- cGCUGUCGCgugucGggUGCGCCGgcgugACGCCGGc -3' miRNA: 3'- -CGGCAGUGa----CuuGCGCGGC-----UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38334 | 0.69 | 0.371022 |
Target: 5'- cGCC-UCGa-GGGCGUGCCGACcgaaGCCGAa -3' miRNA: 3'- -CGGcAGUgaCUUGCGCGGCUG----CGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 20554 | 0.7 | 0.322185 |
Target: 5'- gGCCGcgcCGCUGAucgucgGCGCGUCGggucGCGCCGu -3' miRNA: 3'- -CGGCa--GUGACU------UGCGCGGC----UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25294 | 0.72 | 0.251794 |
Target: 5'- cGgCGUCGCaac-CGgGCCGACGCCGGc -3' miRNA: 3'- -CgGCAGUGacuuGCgCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 31301 | 0.77 | 0.11034 |
Target: 5'- gGCCG-CACc---UGCGCCGACGCCGAg -3' miRNA: 3'- -CGGCaGUGacuuGCGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 30207 | 0.7 | 0.322185 |
Target: 5'- uGCCGUgauagcCGCUGccugaucgaucGACGCGCCG-CGCgCGAu -3' miRNA: 3'- -CGGCA------GUGAC-----------UUGCGCGGCuGCG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 13853 | 0.79 | 0.083516 |
Target: 5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3' miRNA: 3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 784 | 0.72 | 0.251794 |
Target: 5'- aGCCcuUCGaccUUGAGCGUGCCGGuCGCCGGc -3' miRNA: 3'- -CGGc-AGU---GACUUGCGCGGCU-GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 10843 | 0.71 | 0.292386 |
Target: 5'- gGCCGcaaguaCGCUGucACGCGCuUGACGCCGc -3' miRNA: 3'- -CGGCa-----GUGACu-UGCGCG-GCUGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 6595 | 0.73 | 0.205022 |
Target: 5'- cGCCGcCACg--GCGCGCCGcccaGCGCCGc -3' miRNA: 3'- -CGGCaGUGacuUGCGCGGC----UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25435 | 0.75 | 0.175054 |
Target: 5'- gGCCGUCACgccGGGCGUGCCGguuACGaCGAc -3' miRNA: 3'- -CGGCAGUGa--CUUGCGCGGC---UGCgGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 23557 | 0.75 | 0.154784 |
Target: 5'- aGCUGUCGC-GAACGCauugucgaaagcgaaGCCGcCGCCGAg -3' miRNA: 3'- -CGGCAGUGaCUUGCG---------------CGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25672 | 0.76 | 0.130118 |
Target: 5'- gGCCGUCGC-GAACGCGgCGAC-CUGAu -3' miRNA: 3'- -CGGCAGUGaCUUGCGCgGCUGcGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17623 | 0.69 | 0.397266 |
Target: 5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3' miRNA: 3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 46189 | 0.69 | 0.371022 |
Target: 5'- aCCGaggGCUGGGCGCGUCucGCGCCGGa -3' miRNA: 3'- cGGCag-UGACUUGCGCGGc-UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 8678 | 0.7 | 0.354196 |
Target: 5'- uGCCGUCggcguucagcACggcGAACGUGCCGAccgugaCGCCGc -3' miRNA: 3'- -CGGCAG----------UGa--CUUGCGCGGCU------GCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 24748 | 0.7 | 0.337915 |
Target: 5'- aGCCGcUCAC-GAACGCGgCGACGaUCGc -3' miRNA: 3'- -CGGC-AGUGaCUUGCGCgGCUGC-GGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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