miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 19499 0.69 0.371022
Target:  5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3'
miRNA:   3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5'
17070 3' -58 NC_004333.2 + 25294 0.72 0.251794
Target:  5'- cGgCGUCGCaac-CGgGCCGACGCCGGc -3'
miRNA:   3'- -CgGCAGUGacuuGCgCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 31301 0.77 0.11034
Target:  5'- gGCCG-CACc---UGCGCCGACGCCGAg -3'
miRNA:   3'- -CGGCaGUGacuuGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 4841 0.69 0.371022
Target:  5'- --aGUCgGCUGAccguacgcGCGCGCCG-UGCCGAu -3'
miRNA:   3'- cggCAG-UGACU--------UGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 13853 0.79 0.083516
Target:  5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3'
miRNA:   3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 45030 0.68 0.462909
Target:  5'- cGCgCGUggCGCUGGcgGCGCGCaaACGCUGAa -3'
miRNA:   3'- -CG-GCA--GUGACU--UGCGCGgcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25672 0.76 0.130118
Target:  5'- gGCCGUCGC-GAACGCGgCGAC-CUGAu -3'
miRNA:   3'- -CGGCAGUGaCUUGCGCgGCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 46321 0.68 0.453178
Target:  5'- cUCGUCgaagaucgACUGAACGaGCgGGCGCCGu -3'
miRNA:   3'- cGGCAG--------UGACUUGCgCGgCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 20373 0.68 0.443559
Target:  5'- cGCCGUCGaaaaUGAA-GUuaagGCCGugGCCGc -3'
miRNA:   3'- -CGGCAGUg---ACUUgCG----CGGCugCGGCu -5'
17070 3' -58 NC_004333.2 + 17415 0.68 0.423741
Target:  5'- cGCgGUCAC--GACGCGCUGACGaucaaaacgucgcCCGGg -3'
miRNA:   3'- -CGgCAGUGacUUGCGCGGCUGC-------------GGCU- -5'
17070 3' -58 NC_004333.2 + 20755 0.68 0.415412
Target:  5'- cGCCGaCGCggcuGCGCGCCuGAaCGUCGAc -3'
miRNA:   3'- -CGGCaGUGacu-UGCGCGG-CU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 17623 0.69 0.397266
Target:  5'- cGCCGgcCGCgcccgGUGCCGugGCCGAc -3'
miRNA:   3'- -CGGCa-GUGacuugCGCGGCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 46189 0.69 0.371022
Target:  5'- aCCGaggGCUGGGCGCGUCucGCGCCGGa -3'
miRNA:   3'- cGGCag-UGACUUGCGCGGc-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19616 0.7 0.344361
Target:  5'- --gGUCACggcgagcgcggcGAGCGCgGCCGACGCUGGc -3'
miRNA:   3'- cggCAGUGa-----------CUUGCG-CGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30207 0.7 0.322185
Target:  5'- uGCCGUgauagcCGCUGccugaucgaucGACGCGCCG-CGCgCGAu -3'
miRNA:   3'- -CGGCA------GUGAC-----------UUGCGCGGCuGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 28924 0.71 0.292386
Target:  5'- uGCCGUCGgU--GCGUaGCgGGCGCCGAg -3'
miRNA:   3'- -CGGCAGUgAcuUGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 21015 0.72 0.251794
Target:  5'- aGCCGUCAC-GGGCGaCGaaGugGCCGc -3'
miRNA:   3'- -CGGCAGUGaCUUGC-GCggCugCGGCu -5'
17070 3' -58 NC_004333.2 + 6595 0.73 0.205022
Target:  5'- cGCCGcCACg--GCGCGCCGcccaGCGCCGc -3'
miRNA:   3'- -CGGCaGUGacuUGCGCGGC----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 25435 0.75 0.175054
Target:  5'- gGCCGUCACgccGGGCGUGCCGguuACGaCGAc -3'
miRNA:   3'- -CGGCAGUGa--CUUGCGCGGC---UGCgGCU- -5'
17070 3' -58 NC_004333.2 + 23557 0.75 0.154784
Target:  5'- aGCUGUCGC-GAACGCauugucgaaagcgaaGCCGcCGCCGAg -3'
miRNA:   3'- -CGGCAGUGaCUUGCG---------------CGGCuGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.