miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 15353 0.68 0.424673
Target:  5'- cUCGgCGCaGAcgcGCGCGCUGAaCGCCGAa -3'
miRNA:   3'- cGGCaGUGaCU---UGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 30680 0.67 0.492736
Target:  5'- aGCCGUU------CGCGCCGcCGCCGGc -3'
miRNA:   3'- -CGGCAGugacuuGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28936 0.72 0.239333
Target:  5'- gGCaCGagCGCuUGAGCGCGCCGGCuaCGAa -3'
miRNA:   3'- -CG-GCa-GUG-ACUUGCGCGGCUGcgGCU- -5'
17070 3' -58 NC_004333.2 + 40126 0.66 0.585646
Target:  5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3'
miRNA:   3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5'
17070 3' -58 NC_004333.2 + 3073 0.73 0.227392
Target:  5'- -aCGUCGCggcGGACGCGCCGGCGagCGu -3'
miRNA:   3'- cgGCAGUGa--CUUGCGCGGCUGCg-GCu -5'
17070 3' -58 NC_004333.2 + 30065 0.73 0.221613
Target:  5'- cGCCG-CAUggUGcuCGCGCuCGGCGCCGGu -3'
miRNA:   3'- -CGGCaGUG--ACuuGCGCG-GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 41795 0.66 0.565391
Target:  5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3'
miRNA:   3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 22955 0.73 0.214843
Target:  5'- uGCuCGUCACgagcgccaguacGAuCGCGCCGAuCGCCGGg -3'
miRNA:   3'- -CG-GCAGUGa-----------CUuGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 32255 0.68 0.459978
Target:  5'- cGUCGUC-CUGAaccucggcgaguaaGCGCgugGCCGGCcuGCCGAc -3'
miRNA:   3'- -CGGCAGuGACU--------------UGCG---CGGCUG--CGGCU- -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 7781 0.78 0.10733
Target:  5'- uCCGUCGCUGucCGCGCCGAucaccgcuacgaCGCCGu -3'
miRNA:   3'- cGGCAGUGACuuGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 22075 0.77 0.113429
Target:  5'- cCCGcgCGCUGAuuCGCGCCGACGCaaaGAa -3'
miRNA:   3'- cGGCa-GUGACUu-GCGCGGCUGCGg--CU- -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 660 0.77 0.116598
Target:  5'- -aCGUUACUGAugGCGCCauUGCCGAu -3'
miRNA:   3'- cgGCAGUGACUugCGCGGcuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 8725 0.76 0.14468
Target:  5'- aCCGUCAC-GAGCaagccggGCGCCG-CGCCGAg -3'
miRNA:   3'- cGGCAGUGaCUUG-------CGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 5141 0.75 0.165965
Target:  5'- uGCUGaCGCUGuucagcgcCGCGCCGACGUCGGc -3'
miRNA:   3'- -CGGCaGUGACuu------GCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 14325 0.74 0.189518
Target:  5'- uGCCGcCGCUGGcucgaaagagGCGCGCgCGcACGCCGu -3'
miRNA:   3'- -CGGCaGUGACU----------UGCGCG-GC-UGCGGCu -5'
17070 3' -58 NC_004333.2 + 45512 0.74 0.199735
Target:  5'- gGCCGcCAUgcucgcGAAUGCGCCGuCGCCGc -3'
miRNA:   3'- -CGGCaGUGa-----CUUGCGCGGCuGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.