miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 28936 0.72 0.239333
Target:  5'- gGCaCGagCGCuUGAGCGCGCCGGCuaCGAa -3'
miRNA:   3'- -CG-GCa-GUG-ACUUGCGCGGCUGcgGCU- -5'
17070 3' -58 NC_004333.2 + 30065 0.73 0.221613
Target:  5'- cGCCG-CAUggUGcuCGCGCuCGGCGCCGGu -3'
miRNA:   3'- -CGGCaGUG--ACuuGCGCG-GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 22955 0.73 0.214843
Target:  5'- uGCuCGUCACgagcgccaguacGAuCGCGCCGAuCGCCGGg -3'
miRNA:   3'- -CG-GCAGUGa-----------CUuGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 7781 0.78 0.10733
Target:  5'- uCCGUCGCUGucCGCGCCGAucaccgcuacgaCGCCGu -3'
miRNA:   3'- cGGCAGUGACuuGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 22075 0.77 0.113429
Target:  5'- cCCGcgCGCUGAuuCGCGCCGACGCaaaGAa -3'
miRNA:   3'- cGGCa-GUGACUu-GCGCGGCUGCGg--CU- -5'
17070 3' -58 NC_004333.2 + 45512 0.74 0.199735
Target:  5'- gGCCGcCAUgcucgcGAAUGCGCCGuCGCCGc -3'
miRNA:   3'- -CGGCaGUGa-----CUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 8725 0.76 0.14468
Target:  5'- aCCGUCAC-GAGCaagccggGCGCCG-CGCCGAg -3'
miRNA:   3'- cGGCAGUGaCUUG-------CGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 8250 0.72 0.271481
Target:  5'- cGCCGcUCACUGAguACGCGaUgGACgcgGCCGAc -3'
miRNA:   3'- -CGGC-AGUGACU--UGCGC-GgCUG---CGGCU- -5'
17070 3' -58 NC_004333.2 + 6671 0.72 0.271481
Target:  5'- uGCgG-CGCUGGgcgGCGCGCCGugGCggCGAu -3'
miRNA:   3'- -CGgCaGUGACU---UGCGCGGCugCG--GCU- -5'
17070 3' -58 NC_004333.2 + 30306 0.72 0.271481
Target:  5'- -aCG-CACUGAuCGCGCgCGGCGCgCGAu -3'
miRNA:   3'- cgGCaGUGACUuGCGCG-GCUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5'
17070 3' -58 NC_004333.2 + 32255 0.68 0.459978
Target:  5'- cGUCGUC-CUGAaccucggcgaguaaGCGCgugGCCGGCcuGCCGAc -3'
miRNA:   3'- -CGGCAGuGACU--------------UGCG---CGGCUG--CGGCU- -5'
17070 3' -58 NC_004333.2 + 12557 0.71 0.299628
Target:  5'- uGCCGgcaaGCUGGACGCGaaugaCGAC-CCGGg -3'
miRNA:   3'- -CGGCag--UGACUUGCGCg----GCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 19564 0.71 0.285281
Target:  5'- cGCCGcCA----GCGCGCCaGCGCCGAu -3'
miRNA:   3'- -CGGCaGUgacuUGCGCGGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 31168 0.71 0.278312
Target:  5'- -gCGcCGCUG-ACGgGCCaGGCGCCGAa -3'
miRNA:   3'- cgGCaGUGACuUGCgCGG-CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 39401 0.71 0.285281
Target:  5'- -gCGUCGuaGaAGCGCGCCGcCGCCGAg -3'
miRNA:   3'- cgGCAGUgaC-UUGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 14325 0.74 0.189518
Target:  5'- uGCCGcCGCUGGcucgaaagagGCGCGCgCGcACGCCGu -3'
miRNA:   3'- -CGGCaGUGACU----------UGCGCG-GC-UGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.