Results 21 - 40 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 32610 | 0.67 | 0.513104 |
Target: 5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3' miRNA: 3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 4600 | 0.67 | 0.513104 |
Target: 5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3' miRNA: 3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 26021 | 0.66 | 0.576032 |
Target: 5'- cGCCGcgUACUGGcCGCcgGCauCGACGCCGc -3' miRNA: 3'- -CGGCa-GUGACUuGCG--CG--GCUGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 8541 | 0.66 | 0.583507 |
Target: 5'- cGCCGUCGCgagGuACGaaaauccugugggaCGUgGugGCCGGg -3' miRNA: 3'- -CGGCAGUGa--CuUGC--------------GCGgCugCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 40126 | 0.66 | 0.585646 |
Target: 5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3' miRNA: 3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 15356 | 0.66 | 0.586716 |
Target: 5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3' miRNA: 3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 48094 | 0.66 | 0.586716 |
Target: 5'- cGCCcaaCACgccaGAGCGCGCgGgcaagccagaacGCGCCGAu -3' miRNA: 3'- -CGGca-GUGa---CUUGCGCGgC------------UGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 28303 | 0.66 | 0.586716 |
Target: 5'- cGCgCGUCACggucacguGACGCGCCcgGACGCg-- -3' miRNA: 3'- -CG-GCAGUGac------UUGCGCGG--CUGCGgcu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 23836 | 0.66 | 0.586716 |
Target: 5'- uGCCGuUCGCgcaGAACGacuCGUCGcGCGUCGAg -3' miRNA: 3'- -CGGC-AGUGa--CUUGC---GCGGC-UGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 3842 | 0.66 | 0.586716 |
Target: 5'- gGCCGaUCA--GAACGCcacGUCGACGCUGu -3' miRNA: 3'- -CGGC-AGUgaCUUGCG---CGGCUGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 25391 | 0.66 | 0.576032 |
Target: 5'- aCCGUUACgu-ACGUcgcggcagucGCCGGCGUCGGc -3' miRNA: 3'- cGGCAGUGacuUGCG----------CGGCUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 30848 | 0.66 | 0.576032 |
Target: 5'- cGUCGUCAU--GACGguCGCCG-CGCCGu -3' miRNA: 3'- -CGGCAGUGacUUGC--GCGGCuGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 32477 | 0.66 | 0.554802 |
Target: 5'- aGCUG-CGCgagGcGCGgGCCGACaCCGAg -3' miRNA: 3'- -CGGCaGUGa--CuUGCgCGGCUGcGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 31393 | 0.66 | 0.554802 |
Target: 5'- gGCCGgCAUUGcGgGCGCCGugcucgGCGUCGGc -3' miRNA: 3'- -CGGCaGUGACuUgCGCGGC------UGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 38620 | 0.66 | 0.565391 |
Target: 5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3' miRNA: 3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 37592 | 0.66 | 0.565391 |
Target: 5'- aCCGgaacgACUGAucuucACGUgGCCGugGCCGGc -3' miRNA: 3'- cGGCag---UGACU-----UGCG-CGGCugCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 27236 | 0.66 | 0.565391 |
Target: 5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3' miRNA: 3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 41795 | 0.66 | 0.565391 |
Target: 5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3' miRNA: 3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 19154 | 0.66 | 0.576032 |
Target: 5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3' miRNA: 3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 10965 | 0.66 | 0.576032 |
Target: 5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3' miRNA: 3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home