miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 15356 0.66 0.586716
Target:  5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3'
miRNA:   3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5'
17070 3' -58 NC_004333.2 + 48094 0.66 0.586716
Target:  5'- cGCCcaaCACgccaGAGCGCGCgGgcaagccagaacGCGCCGAu -3'
miRNA:   3'- -CGGca-GUGa---CUUGCGCGgC------------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28303 0.66 0.586716
Target:  5'- cGCgCGUCACggucacguGACGCGCCcgGACGCg-- -3'
miRNA:   3'- -CG-GCAGUGac------UUGCGCGG--CUGCGgcu -5'
17070 3' -58 NC_004333.2 + 23836 0.66 0.586716
Target:  5'- uGCCGuUCGCgcaGAACGacuCGUCGcGCGUCGAg -3'
miRNA:   3'- -CGGC-AGUGa--CUUGC---GCGGC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3842 0.66 0.586716
Target:  5'- gGCCGaUCA--GAACGCcacGUCGACGCUGu -3'
miRNA:   3'- -CGGC-AGUgaCUUGCG---CGGCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 27236 0.66 0.565391
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 37592 0.66 0.565391
Target:  5'- aCCGgaacgACUGAucuucACGUgGCCGugGCCGGc -3'
miRNA:   3'- cGGCag---UGACU-----UGCG-CGGCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 25280 0.67 0.492736
Target:  5'- -gCGUCGCgg---GCGUCGACGUCGAg -3'
miRNA:   3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3291 0.67 0.492736
Target:  5'- cGgCGUCAUcgGGGCGgGCgGcGCGCCGGg -3'
miRNA:   3'- -CgGCAGUGa-CUUGCgCGgC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 19793 0.67 0.502875
Target:  5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3'
miRNA:   3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 17695 0.67 0.502875
Target:  5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3'
miRNA:   3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 40742 0.67 0.513104
Target:  5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3'
miRNA:   3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 32610 0.67 0.513104
Target:  5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3'
miRNA:   3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 4600 0.67 0.513104
Target:  5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3'
miRNA:   3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 32477 0.66 0.554802
Target:  5'- aGCUG-CGCgagGcGCGgGCCGACaCCGAg -3'
miRNA:   3'- -CGGCaGUGa--CuUGCgCGGCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 31393 0.66 0.554802
Target:  5'- gGCCGgCAUUGcGgGCGCCGugcucgGCGUCGGc -3'
miRNA:   3'- -CGGCaGUGACuUgCGCGGC------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 38620 0.66 0.565391
Target:  5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3'
miRNA:   3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.