Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 4600 | 0.67 | 0.513104 |
Target: 5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3' miRNA: 3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 32610 | 0.67 | 0.513104 |
Target: 5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3' miRNA: 3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 40742 | 0.67 | 0.513104 |
Target: 5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3' miRNA: 3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 17695 | 0.67 | 0.502875 |
Target: 5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3' miRNA: 3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 30083 | 0.75 | 0.161581 |
Target: 5'- uGCCGUagCGCcgacgGAACGCGUCGAUGCgCGAc -3' miRNA: 3'- -CGGCA--GUGa----CUUGCGCGGCUGCG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14921 | 0.75 | 0.170455 |
Target: 5'- aGCCGUC-CUGGACGacCGCCGagaGCGCCu- -3' miRNA: 3'- -CGGCAGuGACUUGC--GCGGC---UGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25435 | 0.75 | 0.175054 |
Target: 5'- gGCCGUCACgccGGGCGUGCCGguuACGaCGAc -3' miRNA: 3'- -CGGCAGUGa--CUUGCGCGGC---UGCgGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 47487 | 0.74 | 0.179762 |
Target: 5'- uGCCG-CGCUGAACgagGCGCCGGCcgGCgCGAc -3' miRNA: 3'- -CGGCaGUGACUUG---CGCGGCUG--CG-GCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 4879 | 0.73 | 0.204488 |
Target: 5'- uGCCGcCGCUGAccauguagcGCGCGCUGcgauaguGCGCCGu -3' miRNA: 3'- -CGGCaGUGACU---------UGCGCGGC-------UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 6595 | 0.73 | 0.205022 |
Target: 5'- cGCCGcCACg--GCGCGCCGcccaGCGCCGc -3' miRNA: 3'- -CGGCaGUGacuUGCGCGGC----UGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 19914 | 0.73 | 0.210429 |
Target: 5'- cGCCGUCcgcaucaucgACgacGAGCGCGCCGgGCGgCGAg -3' miRNA: 3'- -CGGCAG----------UGa--CUUGCGCGGC-UGCgGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 14998 | 0.75 | 0.161581 |
Target: 5'- aGCCGguuaGC-GGGC-CGCCGACGCCGAc -3' miRNA: 3'- -CGGCag--UGaCUUGcGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 23557 | 0.75 | 0.154784 |
Target: 5'- aGCUGUCGC-GAACGCauugucgaaagcgaaGCCGcCGCCGAg -3' miRNA: 3'- -CGGCAGUGaCUUGCG---------------CGGCuGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 27228 | 0.76 | 0.149049 |
Target: 5'- cGCCGUCGugaucgcagcguCUGccUGCGCCGACGCCu- -3' miRNA: 3'- -CGGCAGU------------GACuuGCGCGGCUGCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 47721 | 0.76 | 0.130118 |
Target: 5'- cGCCGgCACgucGCGCGCCGugGCCu- -3' miRNA: 3'- -CGGCaGUGacuUGCGCGGCugCGGcu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 25672 | 0.76 | 0.130118 |
Target: 5'- gGCCGUCGC-GAACGCGgCGAC-CUGAu -3' miRNA: 3'- -CGGCAGUGaCUUGCGCgGCUGcGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 38374 | 0.77 | 0.113429 |
Target: 5'- cGCUGUCGCgugucGggUGCGCCGgcgugACGCCGGc -3' miRNA: 3'- -CGGCAGUGa----CuuGCGCGGC-----UGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 31301 | 0.77 | 0.11034 |
Target: 5'- gGCCG-CACc---UGCGCCGACGCCGAg -3' miRNA: 3'- -CGGCaGUGacuuGCGCGGCUGCGGCU- -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 13853 | 0.79 | 0.083516 |
Target: 5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3' miRNA: 3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5' |
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17070 | 3' | -58 | NC_004333.2 | + | 3792 | 0.66 | 0.586716 |
Target: 5'- gGCCuUCGCgaucuGCGCaGCgGACGCUGGa -3' miRNA: 3'- -CGGcAGUGacu--UGCG-CGgCUGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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