miRNA display CGI


Results 121 - 140 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 13853 0.79 0.083516
Target:  5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3'
miRNA:   3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 784 0.72 0.251794
Target:  5'- aGCCcuUCGaccUUGAGCGUGCCGGuCGCCGGc -3'
miRNA:   3'- -CGGc-AGU---GACUUGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 21015 0.72 0.251794
Target:  5'- aGCCGUCAC-GGGCGaCGaaGugGCCGc -3'
miRNA:   3'- -CGGCAGUGaCUUGC-GCggCugCGGCu -5'
17070 3' -58 NC_004333.2 + 38693 0.69 0.379638
Target:  5'- cGCCG-CGCUGAaauucccgcaGC-CGCCGGCGCUc- -3'
miRNA:   3'- -CGGCaGUGACU----------UGcGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 46189 0.69 0.371022
Target:  5'- aCCGaggGCUGGGCGCGUCucGCGCCGGa -3'
miRNA:   3'- cGGCag-UGACUUGCGCGGc-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 38334 0.69 0.371022
Target:  5'- cGCC-UCGa-GGGCGUGCCGACcgaaGCCGAa -3'
miRNA:   3'- -CGGcAGUgaCUUGCGCGGCUG----CGGCU- -5'
17070 3' -58 NC_004333.2 + 19499 0.69 0.371022
Target:  5'- cGCUGgcgCGCUGGcgGCGCuCGugGCCGu -3'
miRNA:   3'- -CGGCa--GUGACUugCGCG-GCugCGGCu -5'
17070 3' -58 NC_004333.2 + 4841 0.69 0.371022
Target:  5'- --aGUCgGCUGAccguacgcGCGCGCCG-UGCCGAu -3'
miRNA:   3'- cggCAG-UGACU--------UGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 8678 0.7 0.354196
Target:  5'- uGCCGUCggcguucagcACggcGAACGUGCCGAccgugaCGCCGc -3'
miRNA:   3'- -CGGCAG----------UGa--CUUGCGCGGCU------GCGGCu -5'
17070 3' -58 NC_004333.2 + 13738 0.7 0.345986
Target:  5'- uGCCGUUGaagucGAGCGCGUagGACGCCGc -3'
miRNA:   3'- -CGGCAGUga---CUUGCGCGg-CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 19616 0.7 0.344361
Target:  5'- --gGUCACggcgagcgcggcGAGCGCgGCCGACGCUGGc -3'
miRNA:   3'- cggCAGUGa-----------CUUGCG-CGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 24748 0.7 0.337915
Target:  5'- aGCCGcUCAC-GAACGCGgCGACGaUCGc -3'
miRNA:   3'- -CGGC-AGUGaCUUGCGCgGCUGC-GGCu -5'
17070 3' -58 NC_004333.2 + 20554 0.7 0.322185
Target:  5'- gGCCGcgcCGCUGAucgucgGCGCGUCGggucGCGCCGu -3'
miRNA:   3'- -CGGCa--GUGACU------UGCGCGGC----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 30207 0.7 0.322185
Target:  5'- uGCCGUgauagcCGCUGccugaucgaucGACGCGCCG-CGCgCGAu -3'
miRNA:   3'- -CGGCA------GUGAC-----------UUGCGCGGCuGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 11289 0.71 0.314528
Target:  5'- uGCCGcgCGCuguUGAACuGCGCCGuCGCCu- -3'
miRNA:   3'- -CGGCa-GUG---ACUUG-CGCGGCuGCGGcu -5'
17070 3' -58 NC_004333.2 + 29817 0.71 0.299628
Target:  5'- gGCCGUUgauGCUGAucgcCGCGCCGccaGUCGAc -3'
miRNA:   3'- -CGGCAG---UGACUu---GCGCGGCug-CGGCU- -5'
17070 3' -58 NC_004333.2 + 10843 0.71 0.292386
Target:  5'- gGCCGcaaguaCGCUGucACGCGCuUGACGCCGc -3'
miRNA:   3'- -CGGCa-----GUGACu-UGCGCG-GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 28924 0.71 0.292386
Target:  5'- uGCCGUCGgU--GCGUaGCgGGCGCCGAg -3'
miRNA:   3'- -CGGCAGUgAcuUGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 42492 0.71 0.285281
Target:  5'- aGCCG-CGCUG-AUGCGCUGACGaucauCGAa -3'
miRNA:   3'- -CGGCaGUGACuUGCGCGGCUGCg----GCU- -5'
17070 3' -58 NC_004333.2 + 11621 0.72 0.264784
Target:  5'- gGCCGUCACUucgcgcgcGAACGUGUCGaaguaGCGCUGc -3'
miRNA:   3'- -CGGCAGUGA--------CUUGCGCGGC-----UGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.