Results 21 - 40 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17070 | 3' | -58 | NC_004333.2 | + | 38620 | 0.66 | 0.565391 |
Target: 5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3' miRNA: 3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 37592 | 0.66 | 0.565391 |
Target: 5'- aCCGgaacgACUGAucuucACGUgGCCGugGCCGGc -3' miRNA: 3'- cGGCag---UGACU-----UGCG-CGGCugCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 41795 | 0.66 | 0.565391 |
Target: 5'- cGCCGaucuccUCGUUGAuCGCGCCG-UGCCGc -3' miRNA: 3'- -CGGC------AGUGACUuGCGCGGCuGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 32477 | 0.66 | 0.554802 |
Target: 5'- aGCUG-CGCgagGcGCGgGCCGACaCCGAg -3' miRNA: 3'- -CGGCaGUGa--CuUGCgCGGCUGcGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 25184 | 0.66 | 0.554802 |
Target: 5'- cGCCGcgucucgaacUCGCU--GCGCGaCuCGACGUCGAc -3' miRNA: 3'- -CGGC----------AGUGAcuUGCGC-G-GCUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 31393 | 0.66 | 0.554802 |
Target: 5'- gGCCGgCAUUGcGgGCGCCGugcucgGCGUCGGc -3' miRNA: 3'- -CGGCaGUGACuUgCGCGGC------UGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 44926 | 0.66 | 0.554802 |
Target: 5'- -gCGUCGC---GCGCGCCGAagaaGUCGGc -3' miRNA: 3'- cgGCAGUGacuUGCGCGGCUg---CGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 20663 | 0.66 | 0.544272 |
Target: 5'- cGCCaGUgGCaGGAgGCGCacgggauGACGCCGGa -3' miRNA: 3'- -CGG-CAgUGaCUUgCGCGg------CUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 28409 | 0.66 | 0.544272 |
Target: 5'- cGCCGcaaUCGC--AACGUGUCG-CGCCGGu -3' miRNA: 3'- -CGGC---AGUGacUUGCGCGGCuGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 27550 | 0.66 | 0.533808 |
Target: 5'- cGCCGgggcgaaucugcgCAUUGAACaGCGaaguaaaggugaugcCCGACGUCGAa -3' miRNA: 3'- -CGGCa------------GUGACUUG-CGC---------------GGCUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 3200 | 0.66 | 0.533808 |
Target: 5'- gGCCGgugaGCcGGcccgGCGCGCCGcccgccccgaugACGCCGGg -3' miRNA: 3'- -CGGCag--UGaCU----UGCGCGGC------------UGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 25056 | 0.66 | 0.533808 |
Target: 5'- cGCCGUagUUGAuCGCGCUGuCGCUGc -3' miRNA: 3'- -CGGCAguGACUuGCGCGGCuGCGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 14504 | 0.67 | 0.523416 |
Target: 5'- gGCCGUCcUUGAACGuCGCau-CGCaCGAc -3' miRNA: 3'- -CGGCAGuGACUUGC-GCGgcuGCG-GCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 8417 | 0.67 | 0.523416 |
Target: 5'- -aCGUCGCcGAuACGgugcCGCCGACGuuGAu -3' miRNA: 3'- cgGCAGUGaCU-UGC----GCGGCUGCggCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 29418 | 0.67 | 0.523416 |
Target: 5'- cGCCGUCGCg----GCGCUGGCuGCCc- -3' miRNA: 3'- -CGGCAGUGacuugCGCGGCUG-CGGcu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 13895 | 0.67 | 0.513104 |
Target: 5'- gGCCGgCACgGGcuGCGCGgCGGCuGCCGu -3' miRNA: 3'- -CGGCaGUGaCU--UGCGCgGCUG-CGGCu -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 4600 | 0.67 | 0.513104 |
Target: 5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3' miRNA: 3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 32610 | 0.67 | 0.513104 |
Target: 5'- aUCGaCGC-GAGCGCGCCgcgcGACGUCGGc -3' miRNA: 3'- cGGCaGUGaCUUGCGCGG----CUGCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 40742 | 0.67 | 0.513104 |
Target: 5'- uGCgGUCGC-GAGUGCGCCGAacaguuCGUCGGc -3' miRNA: 3'- -CGgCAGUGaCUUGCGCGGCU------GCGGCU- -5' |
|||||||
17070 | 3' | -58 | NC_004333.2 | + | 44418 | 0.67 | 0.513104 |
Target: 5'- uGCCGggcUCGCUGGcugguGCGUGCgaGGCGCuCGGc -3' miRNA: 3'- -CGGC---AGUGACU-----UGCGCGg-CUGCG-GCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home