miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 5' -52.4 NC_004333.2 + 18298 0.66 0.883304
Target:  5'- cCGUCgGCGUCGuagauuuccGGCGCGUauugCgaugCCGCg -3'
miRNA:   3'- -GCAG-CGCAGC---------CUGUGCAa---Gaaa-GGCG- -5'
17070 5' -52.4 NC_004333.2 + 7511 0.66 0.875601
Target:  5'- ---gGCGUCGGGC-CGUcucgugcagcUCUgggcgCCGCg -3'
miRNA:   3'- gcagCGCAGCCUGuGCA----------AGAaa---GGCG- -5'
17070 5' -52.4 NC_004333.2 + 22124 0.66 0.875601
Target:  5'- --aCGCGcCGuGCACGaUCUgUCCGCc -3'
miRNA:   3'- gcaGCGCaGCcUGUGCaAGAaAGGCG- -5'
17070 5' -52.4 NC_004333.2 + 32953 0.66 0.867641
Target:  5'- gCGUgCGCGUCGGGCAgcUUUgcgacUUCgGCa -3'
miRNA:   3'- -GCA-GCGCAGCCUGUgcAAGa----AAGgCG- -5'
17070 5' -52.4 NC_004333.2 + 47567 0.66 0.845796
Target:  5'- gGUCGCGcCGGccggcgccucguucaGCGCGgcagUCg--CCGCc -3'
miRNA:   3'- gCAGCGCaGCC---------------UGUGCa---AGaaaGGCG- -5'
17070 5' -52.4 NC_004333.2 + 37289 0.66 0.842294
Target:  5'- aCGUCGaUGUCGaaggcGACGCGUUCcagucggUCGCg -3'
miRNA:   3'- -GCAGC-GCAGC-----CUGUGCAAGaaa----GGCG- -5'
17070 5' -52.4 NC_004333.2 + 47213 0.67 0.833383
Target:  5'- uCGcCGCGaCGGGCGCGcuaCUUUCgaGCg -3'
miRNA:   3'- -GCaGCGCaGCCUGUGCaa-GAAAGg-CG- -5'
17070 5' -52.4 NC_004333.2 + 9060 0.67 0.814924
Target:  5'- aCGcCGCGUCGGucgccgccgcGCACGg-----CCGCa -3'
miRNA:   3'- -GCaGCGCAGCC----------UGUGCaagaaaGGCG- -5'
17070 5' -52.4 NC_004333.2 + 22765 0.67 0.805396
Target:  5'- aCGUCGUauucaGGACuGCGUUCgaugcgCCGCa -3'
miRNA:   3'- -GCAGCGcag--CCUG-UGCAAGaaa---GGCG- -5'
17070 5' -52.4 NC_004333.2 + 3763 0.67 0.795683
Target:  5'- cCGUacaGCGUCGacGugGCGUUCUgaucggccUUCGCg -3'
miRNA:   3'- -GCAg--CGCAGC--CugUGCAAGAa-------AGGCG- -5'
17070 5' -52.4 NC_004333.2 + 1109 0.68 0.785795
Target:  5'- aCGUCGCaGUCGcGCGCGaagUCggugCCGUg -3'
miRNA:   3'- -GCAGCG-CAGCcUGUGCa--AGaaa-GGCG- -5'
17070 5' -52.4 NC_004333.2 + 15175 0.68 0.744731
Target:  5'- gCGgcagUGCGUaGGuCGCGUUCgcaaUCCGCa -3'
miRNA:   3'- -GCa---GCGCAgCCuGUGCAAGaa--AGGCG- -5'
17070 5' -52.4 NC_004333.2 + 8766 0.69 0.723456
Target:  5'- gCGUCaCgGUCGG-CACGUUCg--CCGUg -3'
miRNA:   3'- -GCAGcG-CAGCCuGUGCAAGaaaGGCG- -5'
17070 5' -52.4 NC_004333.2 + 23728 0.7 0.668848
Target:  5'- aGUUGCGUCGGACGuCGUaacgggcagcUCga--CGCg -3'
miRNA:   3'- gCAGCGCAGCCUGU-GCA----------AGaaagGCG- -5'
17070 5' -52.4 NC_004333.2 + 19702 0.7 0.657777
Target:  5'- aCGgccaGCGUCGGcCGCGcUCg--CCGCg -3'
miRNA:   3'- -GCag--CGCAGCCuGUGCaAGaaaGGCG- -5'
17070 5' -52.4 NC_004333.2 + 20571 0.7 0.64668
Target:  5'- uCGgCGCGUCGGGuCGCGccguggUgUUUCUGCa -3'
miRNA:   3'- -GCaGCGCAGCCU-GUGCa-----AgAAAGGCG- -5'
17070 5' -52.4 NC_004333.2 + 45802 0.7 0.635571
Target:  5'- -aUCGCGaUCGG-CACGUUCgcgCCGg -3'
miRNA:   3'- gcAGCGC-AGCCuGUGCAAGaaaGGCg -5'
17070 5' -52.4 NC_004333.2 + 30166 0.71 0.602262
Target:  5'- gGUCGCGcaUC-GACGCGUUCcgUCgGCg -3'
miRNA:   3'- gCAGCGC--AGcCUGUGCAAGaaAGgCG- -5'
17070 5' -52.4 NC_004333.2 + 30027 0.72 0.536578
Target:  5'- gGcCGCGcUCGG-CACGcgCUUUUCGCg -3'
miRNA:   3'- gCaGCGC-AGCCuGUGCaaGAAAGGCG- -5'
17070 5' -52.4 NC_004333.2 + 10946 0.72 0.536578
Target:  5'- uGUCGCGcCGG---CGUUCUUcCCGCg -3'
miRNA:   3'- gCAGCGCaGCCuguGCAAGAAaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.