miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17071 3' -56.2 NC_004333.2 + 38741 0.66 0.643258
Target:  5'- cAGGACgGCgaacCGGaCGGCGUGCgCAgccCGCa -3'
miRNA:   3'- -UUCUG-CGa---GCC-GCUGCACGaGUa--GCG- -5'
17071 3' -56.2 NC_004333.2 + 10517 0.66 0.643258
Target:  5'- -cGGCGgUaaaUGGCGACcUGCauaUCGUCGCa -3'
miRNA:   3'- uuCUGCgA---GCCGCUGcACG---AGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 11933 0.66 0.636611
Target:  5'- -cGugGCUCGGCGAgGUcuacuaugacgcgacGCaaggCAUuCGCa -3'
miRNA:   3'- uuCugCGAGCCGCUgCA---------------CGa---GUA-GCG- -5'
17071 3' -56.2 NC_004333.2 + 27191 0.66 0.632178
Target:  5'- cGAGGUGUggCGGCaGAcCGUGCUUcgCGCg -3'
miRNA:   3'- -UUCUGCGa-GCCG-CU-GCACGAGuaGCG- -5'
17071 3' -56.2 NC_004333.2 + 801 0.66 0.621097
Target:  5'- -cGGCGCUUucguuucaucgGGCGGCGUGUUgGcUGCu -3'
miRNA:   3'- uuCUGCGAG-----------CCGCUGCACGAgUaGCG- -5'
17071 3' -56.2 NC_004333.2 + 47972 0.66 0.621097
Target:  5'- -nGGCGUcaUCGGCGGugugcggcUGUGCUaCAUCGg -3'
miRNA:   3'- uuCUGCG--AGCCGCU--------GCACGA-GUAGCg -5'
17071 3' -56.2 NC_004333.2 + 13614 0.66 0.610027
Target:  5'- cGGAUGCacucgUCGGCGAgcacuuCGUGCaUCG-CGCg -3'
miRNA:   3'- uUCUGCG-----AGCCGCU------GCACG-AGUaGCG- -5'
17071 3' -56.2 NC_004333.2 + 45429 0.66 0.610027
Target:  5'- -cGGCGg-CGGCGACG-GCgCAUuCGCg -3'
miRNA:   3'- uuCUGCgaGCCGCUGCaCGaGUA-GCG- -5'
17071 3' -56.2 NC_004333.2 + 17231 0.66 0.610027
Target:  5'- cGGcCGC-CGGCguaucgccgGACGUGaUCGUCGCg -3'
miRNA:   3'- uUCuGCGaGCCG---------CUGCACgAGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 2474 0.66 0.608921
Target:  5'- cGAGAUGCa-GGCGuGCGUugugguaGCUgAUCGCg -3'
miRNA:   3'- -UUCUGCGagCCGC-UGCA-------CGAgUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 468 0.66 0.598976
Target:  5'- -cGACGUgcCGGCGAgCGUGaacgcuUCGUCGUa -3'
miRNA:   3'- uuCUGCGa-GCCGCU-GCACg-----AGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 24520 0.66 0.598976
Target:  5'- cGGAgGC-CGGCGGCGUuccGcCUCAagGCg -3'
miRNA:   3'- uUCUgCGaGCCGCUGCA---C-GAGUagCG- -5'
17071 3' -56.2 NC_004333.2 + 19721 0.66 0.598976
Target:  5'- -cGGCGCU-GGUGGCGUGCaagaCggCGCc -3'
miRNA:   3'- uuCUGCGAgCCGCUGCACGa---GuaGCG- -5'
17071 3' -56.2 NC_004333.2 + 20688 0.66 0.598976
Target:  5'- -uGACGC-CGGaUGGCGUGUaCGgaUCGCa -3'
miRNA:   3'- uuCUGCGaGCC-GCUGCACGaGU--AGCG- -5'
17071 3' -56.2 NC_004333.2 + 37722 0.66 0.587953
Target:  5'- ---cUGCUUGGCGGCGUGUgUCAgaGCg -3'
miRNA:   3'- uucuGCGAGCCGCUGCACG-AGUagCG- -5'
17071 3' -56.2 NC_004333.2 + 39111 0.67 0.576969
Target:  5'- cGAGGCGCucacgcagaUCGGCgucGACGUGUcgCAggUCGCc -3'
miRNA:   3'- -UUCUGCG---------AGCCG---CUGCACGa-GU--AGCG- -5'
17071 3' -56.2 NC_004333.2 + 23875 0.67 0.576969
Target:  5'- -cGACGUUCGGguuCGUGCcgccguUCAUCGUg -3'
miRNA:   3'- uuCUGCGAGCCgcuGCACG------AGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 22594 0.67 0.576969
Target:  5'- -cGGCGCUCGuguuguucGCGuccguCGgGUUCGUCGCg -3'
miRNA:   3'- uuCUGCGAGC--------CGCu----GCaCGAGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 28241 0.67 0.576969
Target:  5'- -cGGCgGCUCGccgccCGGCGcGCUCGUCGUc -3'
miRNA:   3'- uuCUG-CGAGCc----GCUGCaCGAGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 10804 0.67 0.566029
Target:  5'- gAGGACgGC-CGcGCGACGcggUGCaCGUCGCg -3'
miRNA:   3'- -UUCUG-CGaGC-CGCUGC---ACGaGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.