miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17071 3' -56.2 NC_004333.2 + 15964 0.99 0.003793
Target:  5'- cAAGA-GCUCGGCGACGUGCUCAUCGCg -3'
miRNA:   3'- -UUCUgCGAGCCGCUGCACGAGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 24598 0.77 0.127999
Target:  5'- -uGAUGCUCGGCGGCG-GCU--UCGCu -3'
miRNA:   3'- uuCUGCGAGCCGCUGCaCGAguAGCG- -5'
17071 3' -56.2 NC_004333.2 + 5268 0.75 0.183412
Target:  5'- -uGAUGCgauaCGGgGGCGUGCUCAUCagGCg -3'
miRNA:   3'- uuCUGCGa---GCCgCUGCACGAGUAG--CG- -5'
17071 3' -56.2 NC_004333.2 + 43425 0.74 0.20378
Target:  5'- cAGACGCUCGGgucgggcUGACGgacGCgcgCAUCGCg -3'
miRNA:   3'- uUCUGCGAGCC-------GCUGCa--CGa--GUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 6646 0.74 0.227279
Target:  5'- --cGCGCUCGGCaGCGcGCUCggCGCg -3'
miRNA:   3'- uucUGCGAGCCGcUGCaCGAGuaGCG- -5'
17071 3' -56.2 NC_004333.2 + 5541 0.73 0.239553
Target:  5'- -cGugGC-CGGCGACG-GCUUggCGCg -3'
miRNA:   3'- uuCugCGaGCCGCUGCaCGAGuaGCG- -5'
17071 3' -56.2 NC_004333.2 + 9411 0.73 0.239553
Target:  5'- -cGGCaaGCUCGGCGAUGccGCUCGUgGCc -3'
miRNA:   3'- uuCUG--CGAGCCGCUGCa-CGAGUAgCG- -5'
17071 3' -56.2 NC_004333.2 + 48041 0.73 0.245895
Target:  5'- uGGGCGCU-GGUGGuuUGUGCUCAUgCGCg -3'
miRNA:   3'- uUCUGCGAgCCGCU--GCACGAGUA-GCG- -5'
17071 3' -56.2 NC_004333.2 + 41579 0.73 0.252376
Target:  5'- -cGGCGCUgGGCGGCGcGC-CGUgGCg -3'
miRNA:   3'- uuCUGCGAgCCGCUGCaCGaGUAgCG- -5'
17071 3' -56.2 NC_004333.2 + 13364 0.72 0.286901
Target:  5'- cGGGCGCggcaCGaGCGGCGUGUccaugaucuggUCGUCGCc -3'
miRNA:   3'- uUCUGCGa---GC-CGCUGCACG-----------AGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 24102 0.72 0.308576
Target:  5'- -cGAUGUUCGGCGAUcggggcaaGUGCUaugucggcuacgaCAUCGCg -3'
miRNA:   3'- uuCUGCGAGCCGCUG--------CACGA-------------GUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 36751 0.71 0.349673
Target:  5'- --aGCGgUCgaaGGCGACGUGCugcggcauuUCAUCGCg -3'
miRNA:   3'- uucUGCgAG---CCGCUGCACG---------AGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 28992 0.7 0.358175
Target:  5'- cGGcCGC-CGGguCGGCGUGCgCAUCGCg -3'
miRNA:   3'- uUCuGCGaGCC--GCUGCACGaGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 18224 0.7 0.36682
Target:  5'- --cGCGCUCGGC-ACGcGCUUuUCGCg -3'
miRNA:   3'- uucUGCGAGCCGcUGCaCGAGuAGCG- -5'
17071 3' -56.2 NC_004333.2 + 37795 0.7 0.375608
Target:  5'- aAGGAUGCgaagCGGCG-CGaUGCgaagcgCGUCGCg -3'
miRNA:   3'- -UUCUGCGa---GCCGCuGC-ACGa-----GUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 47908 0.7 0.393606
Target:  5'- -uGACcguGCUCGGCGGCGUGaCgaccaCAUCGa -3'
miRNA:   3'- uuCUG---CGAGCCGCUGCAC-Ga----GUAGCg -5'
17071 3' -56.2 NC_004333.2 + 37110 0.7 0.393606
Target:  5'- cGGGCaGCUgCGG-GGCGUGCUCGaagCGCu -3'
miRNA:   3'- uUCUG-CGA-GCCgCUGCACGAGUa--GCG- -5'
17071 3' -56.2 NC_004333.2 + 28738 0.7 0.402812
Target:  5'- gGAGGCGCU-GGCacgcGCGUGaaCGUCGCg -3'
miRNA:   3'- -UUCUGCGAgCCGc---UGCACgaGUAGCG- -5'
17071 3' -56.2 NC_004333.2 + 6703 0.69 0.412153
Target:  5'- cGGGGCGCaUUGGCGACGaGC-CAUgCGUg -3'
miRNA:   3'- -UUCUGCG-AGCCGCUGCaCGaGUA-GCG- -5'
17071 3' -56.2 NC_004333.2 + 47474 0.69 0.421627
Target:  5'- -cGGCGCUCgcgGGCGGCG-GCaCgAUCGCg -3'
miRNA:   3'- uuCUGCGAG---CCGCUGCaCGaG-UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.