miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17071 5' -61.1 NC_004333.2 + 36887 0.66 0.396354
Target:  5'- aCGGCGcAGUucaacAGCGCGcGGCaacgcgaacuCGGCCg- -3'
miRNA:   3'- -GCCGC-UCAu----UCGCGCaCCG----------GCCGGac -5'
17071 5' -61.1 NC_004333.2 + 37877 0.66 0.387548
Target:  5'- aGGCcGGUGAGCGCu---UCGGCCUGc -3'
miRNA:   3'- gCCGcUCAUUCGCGcaccGGCCGGAC- -5'
17071 5' -61.1 NC_004333.2 + 13018 0.66 0.378871
Target:  5'- cCGGCGAuGgcGGUGCGaUGuuuuaCCGGCCUu -3'
miRNA:   3'- -GCCGCU-CauUCGCGC-ACc----GGCCGGAc -5'
17071 5' -61.1 NC_004333.2 + 40867 0.66 0.378011
Target:  5'- cCGGCGAuGgucGCGCGacucgguaucuacUGcGCCGGCUUGc -3'
miRNA:   3'- -GCCGCU-CauuCGCGC-------------AC-CGGCCGGAC- -5'
17071 5' -61.1 NC_004333.2 + 15164 0.66 0.375438
Target:  5'- gCGGCGAgcgagcggcagugcGUAGGuCGCGUucgcaauccgcacGGCCGGCa-- -3'
miRNA:   3'- -GCCGCU--------------CAUUC-GCGCA-------------CCGGCCGgac -5'
17071 5' -61.1 NC_004333.2 + 44585 0.66 0.373729
Target:  5'- gGGCGAaUAcgaucgccgcgauguGGCGCacuauGUGGUCGGCCg- -3'
miRNA:   3'- gCCGCUcAU---------------UCGCG-----CACCGGCCGGac -5'
17071 5' -61.1 NC_004333.2 + 25638 0.66 0.371175
Target:  5'- gCGGCGucGUcAGCGCGgucgaaagcgucuuGCCGGCCg- -3'
miRNA:   3'- -GCCGCu-CAuUCGCGCac------------CGGCCGGac -5'
17071 5' -61.1 NC_004333.2 + 28976 0.66 0.370326
Target:  5'- gCGGCGAucaGUu-GCGCGgccgccgGGUCGGCgUGc -3'
miRNA:   3'- -GCCGCU---CAuuCGCGCa------CCGGCCGgAC- -5'
17071 5' -61.1 NC_004333.2 + 8970 0.66 0.370326
Target:  5'- uCGGcCGAcggGAGCGCG-GGCCGuGCUg- -3'
miRNA:   3'- -GCC-GCUca-UUCGCGCaCCGGC-CGGac -5'
17071 5' -61.1 NC_004333.2 + 27663 0.66 0.370326
Target:  5'- -aGCGAGc-GGCGCGgcggcGGCCGGCa-- -3'
miRNA:   3'- gcCGCUCauUCGCGCa----CCGGCCGgac -5'
17071 5' -61.1 NC_004333.2 + 20967 0.66 0.361914
Target:  5'- aCGGCGAuGUAccGCGCGaaGCaCGGUCUGc -3'
miRNA:   3'- -GCCGCU-CAUu-CGCGCacCG-GCCGGAC- -5'
17071 5' -61.1 NC_004333.2 + 47834 0.66 0.361914
Target:  5'- aCGGCGcuucuuuggaGGUGAGCaUGUGGCuCGGCg-- -3'
miRNA:   3'- -GCCGC----------UCAUUCGcGCACCG-GCCGgac -5'
17071 5' -61.1 NC_004333.2 + 8360 0.66 0.361914
Target:  5'- aCGGCagccGGGUAuGCGCGUucGGaCGGCCa- -3'
miRNA:   3'- -GCCG----CUCAUuCGCGCA--CCgGCCGGac -5'
17071 5' -61.1 NC_004333.2 + 44430 0.66 0.353635
Target:  5'- uGGCuGGUGcGUGCGaGGCgcuCGGCCUGc -3'
miRNA:   3'- gCCGcUCAUuCGCGCaCCG---GCCGGAC- -5'
17071 5' -61.1 NC_004333.2 + 46000 0.67 0.321874
Target:  5'- uCGGCGcc-GAGgGC-UGGCaCGGCCUGc -3'
miRNA:   3'- -GCCGCucaUUCgCGcACCG-GCCGGAC- -5'
17071 5' -61.1 NC_004333.2 + 30691 0.67 0.306811
Target:  5'- gCGGuCGAGUgcGAGCaGCGUGaGCgcggCGGCCUu -3'
miRNA:   3'- -GCC-GCUCA--UUCG-CGCAC-CG----GCCGGAc -5'
17071 5' -61.1 NC_004333.2 + 17867 0.68 0.292293
Target:  5'- uGGCGGGUGgugucgcaGGCGCGacGGC-GGCCa- -3'
miRNA:   3'- gCCGCUCAU--------UCGCGCa-CCGgCCGGac -5'
17071 5' -61.1 NC_004333.2 + 17438 0.68 0.285239
Target:  5'- uCGGUGAGUAccucGGCGaCGccacGGCCGaGCUUGc -3'
miRNA:   3'- -GCCGCUCAU----UCGC-GCa---CCGGC-CGGAC- -5'
17071 5' -61.1 NC_004333.2 + 767 0.68 0.278319
Target:  5'- gCGGCGAuGUAGcugcgauugcuuGCGCGUcGGUCGGCgCUu -3'
miRNA:   3'- -GCCGCU-CAUU------------CGCGCA-CCGGCCG-GAc -5'
17071 5' -61.1 NC_004333.2 + 39063 0.68 0.264881
Target:  5'- aCGGCGAGUAcGCGCGacucgugcgccgUGcGUCGGCaCUc -3'
miRNA:   3'- -GCCGCUCAUuCGCGC------------AC-CGGCCG-GAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.