Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17072 | 3' | -60.1 | NC_004333.2 | + | 15006 | 0.69 | 0.296374 |
Target: 5'- aGCGGGCCgccGACGCCGAc-GCCgCGAa- -3' miRNA: 3'- -CGCCCGG---CUGUGGCUcuUGGgGCUgc -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 8098 | 0.72 | 0.217035 |
Target: 5'- aCGGGUCGACGuaggucgucagguagUuCGGGAugCCCGACGa -3' miRNA: 3'- cGCCCGGCUGU---------------G-GCUCUugGGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 1997 | 0.74 | 0.145404 |
Target: 5'- aGCGuuacGCCGGCGCgGAuGAugCCCGACGu -3' miRNA: 3'- -CGCc---CGGCUGUGgCU-CUugGGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 30073 | 0.77 | 0.084609 |
Target: 5'- cGCGGGUCGAUGCCGu-AGCgCCGACGg -3' miRNA: 3'- -CGCCCGGCUGUGGCucUUGgGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 25305 | 0.82 | 0.038746 |
Target: 5'- cCGGGCCGACGCCGGcGAcuGCCgCGACGu -3' miRNA: 3'- cGCCCGGCUGUGGCU-CU--UGGgGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 3196 | 0.67 | 0.430683 |
Target: 5'- aCGaGGCCGgugagccggcccggcGCGCCGcccGCCCCGAUGa -3' miRNA: 3'- cGC-CCGGC---------------UGUGGCucuUGGGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 25429 | 0.66 | 0.47428 |
Target: 5'- gGCGgcGGCCGucACGCCGGGcguGCCgguuaCGACGa -3' miRNA: 3'- -CGC--CCGGC--UGUGGCUCu--UGGg----GCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 11229 | 0.66 | 0.455043 |
Target: 5'- cGCGGcuccuuGCCGGCGCuCGAGugcuGCCa-GACGg -3' miRNA: 3'- -CGCC------CGGCUGUG-GCUCu---UGGggCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 8967 | 0.66 | 0.442768 |
Target: 5'- cGCGGGCUGG-AUCGuGGGCCgugcgcggcggcgaCCGACGc -3' miRNA: 3'- -CGCCCGGCUgUGGCuCUUGG--------------GGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 17167 | 0.67 | 0.400013 |
Target: 5'- uGCGcGUCGACaagGCCGcugcGAGCCCCGAUc -3' miRNA: 3'- -CGCcCGGCUG---UGGCu---CUUGGGGCUGc -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 37199 | 0.69 | 0.318309 |
Target: 5'- cGCGcGCCGGUGCCGAGuuccGCCgCGACGc -3' miRNA: 3'- -CGCcCGGCUGUGGCUCu---UGGgGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 41290 | 0.66 | 0.48405 |
Target: 5'- -aGGGCggcgacuucgaCGAgGCCGAGcuCgCCCGGCGc -3' miRNA: 3'- cgCCCG-----------GCUgUGGCUCuuG-GGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 47732 | 0.68 | 0.365767 |
Target: 5'- cGCGcGCCGugGCCucGuacACCCCGGCc -3' miRNA: 3'- -CGCcCGGCugUGGcuCu--UGGGGCUGc -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 4223 | 0.66 | 0.455043 |
Target: 5'- uGCGcGuuGACGCuCGAGAACaUCGGCGu -3' miRNA: 3'- -CGCcCggCUGUG-GCUCUUGgGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 858 | 0.71 | 0.237653 |
Target: 5'- cUGGGCCauaGGCACCGAGAcgacGCCgUUGGCGa -3' miRNA: 3'- cGCCCGG---CUGUGGCUCU----UGG-GGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 40429 | 0.71 | 0.231767 |
Target: 5'- gGCGuGGCCGGCcUCGAGAACUaCGGCc -3' miRNA: 3'- -CGC-CCGGCUGuGGCUCUUGGgGCUGc -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 35810 | 0.7 | 0.275632 |
Target: 5'- cGCGGGCgGGCGCUacGGcgcCCCCGACc -3' miRNA: 3'- -CGCCCGgCUGUGGcuCUu--GGGGCUGc -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 24711 | 0.69 | 0.303553 |
Target: 5'- aGCGcGGCCGACaacaauGCgGucAACCCCGAUa -3' miRNA: 3'- -CGC-CCGGCUG------UGgCucUUGGGGCUGc -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 17780 | 0.69 | 0.318309 |
Target: 5'- uCGGuCCGGCGCCGGucGCUUCGACGu -3' miRNA: 3'- cGCCcGGCUGUGGCUcuUGGGGCUGC- -5' |
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17072 | 3' | -60.1 | NC_004333.2 | + | 17089 | 0.68 | 0.382635 |
Target: 5'- aCGGGCCaGGCGCCGA--ACCUgcaGGCGc -3' miRNA: 3'- cGCCCGG-CUGUGGCUcuUGGGg--CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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