miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17073 5' -53.5 NC_004333.2 + 10357 0.66 0.815653
Target:  5'- gUCUGguACUcGAUCGCGAcgcgcuucgcaucgcGCCGCUUcGCAu -3'
miRNA:   3'- -GGAC--UGA-CUAGCGCU---------------UGGCGAGcUGU- -5'
17073 5' -53.5 NC_004333.2 + 1456 0.66 0.792477
Target:  5'- --cGG-UGAUCGUGAACUGgUCGACc -3'
miRNA:   3'- ggaCUgACUAGCGCUUGGCgAGCUGu -5'
17073 5' -53.5 NC_004333.2 + 41290 0.66 0.782521
Target:  5'- gCC--GCUGucgcCGCGAuCCGCUCGAUg -3'
miRNA:   3'- -GGacUGACua--GCGCUuGGCGAGCUGu -5'
17073 5' -53.5 NC_004333.2 + 29821 0.66 0.772405
Target:  5'- gUUGauGCUGAUCGcCGcGCCGCcagUCGACu -3'
miRNA:   3'- gGAC--UGACUAGC-GCuUGGCG---AGCUGu -5'
17073 5' -53.5 NC_004333.2 + 17927 0.66 0.769341
Target:  5'- gCCUGuacgucaugaacgcACUGAUCGCGcGCgGCgcgCGAUc -3'
miRNA:   3'- -GGAC--------------UGACUAGCGCuUGgCGa--GCUGu -5'
17073 5' -53.5 NC_004333.2 + 7408 0.67 0.762141
Target:  5'- gCCUGcgGCcagGucugCGCGAugCGCUCGAUc -3'
miRNA:   3'- -GGAC--UGa--Cua--GCGCUugGCGAGCUGu -5'
17073 5' -53.5 NC_004333.2 + 16852 0.67 0.762141
Target:  5'- gCUGGCcgGcAUUGCGGGCgccgUGCUCGGCGu -3'
miRNA:   3'- gGACUGa-C-UAGCGCUUG----GCGAGCUGU- -5'
17073 5' -53.5 NC_004333.2 + 40169 0.67 0.762141
Target:  5'- aCUGgacgacGCUGGUCGCGGcguucaucACCGCagagcCGACGa -3'
miRNA:   3'- gGAC------UGACUAGCGCU--------UGGCGa----GCUGU- -5'
17073 5' -53.5 NC_004333.2 + 35472 0.67 0.740158
Target:  5'- gCUGAUgaacgaugUGAUCGUGAugauccaguugucGCUGUUCGGCGc -3'
miRNA:   3'- gGACUG--------ACUAGCGCU-------------UGGCGAGCUGU- -5'
17073 5' -53.5 NC_004333.2 + 23128 0.67 0.73058
Target:  5'- aCUGAUguUGcgCGCGGACUGgaCGAUg -3'
miRNA:   3'- gGACUG--ACuaGCGCUUGGCgaGCUGu -5'
17073 5' -53.5 NC_004333.2 + 1243 0.67 0.719842
Target:  5'- cCUUGGCUGcgCGCGAggcuucgcGgCGCUCG-CGg -3'
miRNA:   3'- -GGACUGACuaGCGCU--------UgGCGAGCuGU- -5'
17073 5' -53.5 NC_004333.2 + 17247 0.68 0.713356
Target:  5'- gCCgGACgUGAucgUCGCGAugaaggcaagcgucgACgCGCUCGACGc -3'
miRNA:   3'- -GGaCUG-ACU---AGCGCU---------------UG-GCGAGCUGU- -5'
17073 5' -53.5 NC_004333.2 + 46106 0.68 0.709015
Target:  5'- cCUUGGCcGAgCGCGGugCGCgcuaCGGCAa -3'
miRNA:   3'- -GGACUGaCUaGCGCUugGCGa---GCUGU- -5'
17073 5' -53.5 NC_004333.2 + 12194 0.68 0.709015
Target:  5'- aCCgcGAaccaGGUCGCGAGCacgguGCUCGACGg -3'
miRNA:   3'- -GGa-CUga--CUAGCGCUUGg----CGAGCUGU- -5'
17073 5' -53.5 NC_004333.2 + 18983 0.68 0.687141
Target:  5'- ---aGCUGAUCuGCGAugCGCU-GACAa -3'
miRNA:   3'- ggacUGACUAG-CGCUugGCGAgCUGU- -5'
17073 5' -53.5 NC_004333.2 + 22721 0.68 0.676118
Target:  5'- gCCUGcCUGaAUgGUGaAGCCGCUCGGg- -3'
miRNA:   3'- -GGACuGAC-UAgCGC-UUGGCGAGCUgu -5'
17073 5' -53.5 NC_004333.2 + 21019 0.69 0.620582
Target:  5'- -aUGGCUGAUCGCG---CGC-CGACAc -3'
miRNA:   3'- ggACUGACUAGCGCuugGCGaGCUGU- -5'
17073 5' -53.5 NC_004333.2 + 2498 0.69 0.598368
Target:  5'- ---aGCUGAUCGCGcgcCCGCUCGGu- -3'
miRNA:   3'- ggacUGACUAGCGCuu-GGCGAGCUgu -5'
17073 5' -53.5 NC_004333.2 + 17627 0.7 0.5873
Target:  5'- gCUGGCagacGAUCGCGAAggCGCUCGAg- -3'
miRNA:   3'- gGACUGa---CUAGCGCUUg-GCGAGCUgu -5'
17073 5' -53.5 NC_004333.2 + 934 0.7 0.57627
Target:  5'- gCUGACUGugcUGCGAugcucaauCCGCUCGAa- -3'
miRNA:   3'- gGACUGACua-GCGCUu-------GGCGAGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.