Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17073 | 5' | -53.5 | NC_004333.2 | + | 15370 | 1.1 | 0.001209 |
Target: 5'- uCCUGACUGAUCGCGAACCGCUCGACAu -3' miRNA: 3'- -GGACUGACUAGCGCUUGGCGAGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 44428 | 0.79 | 0.18711 |
Target: 5'- gCUGGCUGGUgcgUGCGAGgCGCUCGGCc -3' miRNA: 3'- gGACUGACUA---GCGCUUgGCGAGCUGu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 5515 | 0.73 | 0.401548 |
Target: 5'- --cGGCgcuGUUGCGGGCUGCUCGACGg -3' miRNA: 3'- ggaCUGac-UAGCGCUUGGCGAGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 30990 | 0.73 | 0.410911 |
Target: 5'- cCCUG-CUG-UUGCGGGCUGCUCGcGCGg -3' miRNA: 3'- -GGACuGACuAGCGCUUGGCGAGC-UGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 24786 | 0.72 | 0.430038 |
Target: 5'- uCCUGGauguaGGUUGCGGGCaCGUUCGGCAg -3' miRNA: 3'- -GGACUga---CUAGCGCUUG-GCGAGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 8970 | 0.72 | 0.449678 |
Target: 5'- --gGGCUgGAUCGUGGGCCGUgcgCGGCGg -3' miRNA: 3'- ggaCUGA-CUAGCGCUUGGCGa--GCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 28585 | 0.71 | 0.500818 |
Target: 5'- --cGAUcaUGuAUCGCGggUCGCUCGGCu -3' miRNA: 3'- ggaCUG--AC-UAGCGCuuGGCGAGCUGu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 47771 | 0.71 | 0.521989 |
Target: 5'- uCUUGAUcaagGAUCGCGcgcucuACgCGCUCGGCAa -3' miRNA: 3'- -GGACUGa---CUAGCGCu-----UG-GCGAGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 45836 | 0.71 | 0.521989 |
Target: 5'- aCCUGuuCUGGUCG-GuGCUGCUCGAUg -3' miRNA: 3'- -GGACu-GACUAGCgCuUGGCGAGCUGu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 30223 | 0.7 | 0.57627 |
Target: 5'- gCCUGAUcGAUCGaCGcGCCGCgcgCGAUc -3' miRNA: 3'- -GGACUGaCUAGC-GCuUGGCGa--GCUGu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 934 | 0.7 | 0.57627 |
Target: 5'- gCUGACUGugcUGCGAugcucaauCCGCUCGAa- -3' miRNA: 3'- gGACUGACua-GCGCUu-------GGCGAGCUgu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 17627 | 0.7 | 0.5873 |
Target: 5'- gCUGGCagacGAUCGCGAAggCGCUCGAg- -3' miRNA: 3'- gGACUGa---CUAGCGCUUg-GCGAGCUgu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 2498 | 0.69 | 0.598368 |
Target: 5'- ---aGCUGAUCGCGcgcCCGCUCGGu- -3' miRNA: 3'- ggacUGACUAGCGCuu-GGCGAGCUgu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 21019 | 0.69 | 0.620582 |
Target: 5'- -aUGGCUGAUCGCG---CGC-CGACAc -3' miRNA: 3'- ggACUGACUAGCGCuugGCGaGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 22721 | 0.68 | 0.676118 |
Target: 5'- gCCUGcCUGaAUgGUGaAGCCGCUCGGg- -3' miRNA: 3'- -GGACuGAC-UAgCGC-UUGGCGAGCUgu -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 18983 | 0.68 | 0.687141 |
Target: 5'- ---aGCUGAUCuGCGAugCGCU-GACAa -3' miRNA: 3'- ggacUGACUAG-CGCUugGCGAgCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 46106 | 0.68 | 0.709015 |
Target: 5'- cCUUGGCcGAgCGCGGugCGCgcuaCGGCAa -3' miRNA: 3'- -GGACUGaCUaGCGCUugGCGa---GCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 12194 | 0.68 | 0.709015 |
Target: 5'- aCCgcGAaccaGGUCGCGAGCacgguGCUCGACGg -3' miRNA: 3'- -GGa-CUga--CUAGCGCUUGg----CGAGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 17247 | 0.68 | 0.713356 |
Target: 5'- gCCgGACgUGAucgUCGCGAugaaggcaagcgucgACgCGCUCGACGc -3' miRNA: 3'- -GGaCUG-ACU---AGCGCU---------------UG-GCGAGCUGU- -5' |
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17073 | 5' | -53.5 | NC_004333.2 | + | 1243 | 0.67 | 0.719842 |
Target: 5'- cCUUGGCUGcgCGCGAggcuucgcGgCGCUCG-CGg -3' miRNA: 3'- -GGACUGACuaGCGCU--------UgGCGAGCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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