miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17074 3' -60.1 NC_004333.2 + 44481 0.66 0.461442
Target:  5'- aGCCAGCGagccCGgcaGGCCGuuguACCGCgcacGCGc -3'
miRNA:   3'- -CGGUCGCga--GCa--CCGGC----UGGCGa---UGC- -5'
17074 3' -60.1 NC_004333.2 + 27822 0.66 0.461442
Target:  5'- cGCCugacGgGCUCGgcGGCCGACCagauucgcGCcGCGa -3'
miRNA:   3'- -CGGu---CgCGAGCa-CCGGCUGG--------CGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 11239 0.66 0.461442
Target:  5'- uGCCGGCGCUCGagugcuGCCaGACgGCccaaUGCa -3'
miRNA:   3'- -CGGUCGCGAGCac----CGG-CUGgCG----AUGc -5'
17074 3' -60.1 NC_004333.2 + 39005 0.66 0.45564
Target:  5'- uGCCGGuCGCgUCGUGGUucgucucgugcuuguUGGCCGUgcCGa -3'
miRNA:   3'- -CGGUC-GCG-AGCACCG---------------GCUGGCGauGC- -5'
17074 3' -60.1 NC_004333.2 + 38601 0.66 0.451794
Target:  5'- cGCCAGCuacaGC-CG-GGCgCG-CCGCUGCc -3'
miRNA:   3'- -CGGUCG----CGaGCaCCG-GCuGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 20589 0.66 0.451794
Target:  5'- cGCCAGCGagcggcgCGgcggcGGCCGGCagcgGUUGCGc -3'
miRNA:   3'- -CGGUCGCga-----GCa----CCGGCUGg---CGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 12450 0.66 0.442257
Target:  5'- cGCCGG-GCggggCGcGGgCGGgCGCUACGg -3'
miRNA:   3'- -CGGUCgCGa---GCaCCgGCUgGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 38716 0.66 0.442257
Target:  5'- cGCCGGCGCUCGccuucaCCGAuacaauCCGCaugACGa -3'
miRNA:   3'- -CGGUCGCGAGCacc---GGCU------GGCGa--UGC- -5'
17074 3' -60.1 NC_004333.2 + 30496 0.66 0.442257
Target:  5'- aGCCcgAGCGUgc--GGCCGACCagGCUGCc -3'
miRNA:   3'- -CGG--UCGCGagcaCCGGCUGG--CGAUGc -5'
17074 3' -60.1 NC_004333.2 + 6834 0.66 0.442257
Target:  5'- uCCGGCGgggcaCUCGUcGGCuacCGGCgGCUGCGc -3'
miRNA:   3'- cGGUCGC-----GAGCA-CCG---GCUGgCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 23670 0.66 0.442257
Target:  5'- cGCCGGCcuccggcggcuGCaUCGUGGCCGGCgGaaaaccgaGCGa -3'
miRNA:   3'- -CGGUCG-----------CG-AGCACCGGCUGgCga------UGC- -5'
17074 3' -60.1 NC_004333.2 + 42095 0.66 0.442257
Target:  5'- cGCCc-CGCUCGuUGGCCG-CgCGCUucACGc -3'
miRNA:   3'- -CGGucGCGAGC-ACCGGCuG-GCGA--UGC- -5'
17074 3' -60.1 NC_004333.2 + 26026 0.66 0.442257
Target:  5'- uCCAGCGCcgCGUacuGGCCGccggcaucgacGCCGC-GCGc -3'
miRNA:   3'- cGGUCGCGa-GCA---CCGGC-----------UGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 24814 0.66 0.441309
Target:  5'- cGCC-GCGUUCGUGaGCggcuucuCGACCGaugACGg -3'
miRNA:   3'- -CGGuCGCGAGCAC-CG-------GCUGGCga-UGC- -5'
17074 3' -60.1 NC_004333.2 + 39057 0.66 0.439418
Target:  5'- aGCCGgacggcgaguacgcGCGaCUCGUGcGCCGugCGUcgGCa -3'
miRNA:   3'- -CGGU--------------CGC-GAGCAC-CGGCugGCGa-UGc -5'
17074 3' -60.1 NC_004333.2 + 25496 0.66 0.432835
Target:  5'- cCCGGCGUgacggcCGccGCCGGCaCGCUGCa -3'
miRNA:   3'- cGGUCGCGa-----GCacCGGCUG-GCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 1449 0.66 0.432835
Target:  5'- gGCUucauGCGUUCGUucaaGGCCG-CCGCcgGCa -3'
miRNA:   3'- -CGGu---CGCGAGCA----CCGGCuGGCGa-UGc -5'
17074 3' -60.1 NC_004333.2 + 20394 0.66 0.432835
Target:  5'- gGCCguGGcCGCa-GUGGCCGcGCCGCU-CGu -3'
miRNA:   3'- -CGG--UC-GCGagCACCGGC-UGGCGAuGC- -5'
17074 3' -60.1 NC_004333.2 + 27350 0.66 0.430031
Target:  5'- cGCCG--GCUCGUGG-CGACCGUucagccaguccgaaUACGa -3'
miRNA:   3'- -CGGUcgCGAGCACCgGCUGGCG--------------AUGC- -5'
17074 3' -60.1 NC_004333.2 + 47558 0.66 0.422607
Target:  5'- gGCCGGCGcCUCGUucagcgcGGCagucGCCGCcgGCGc -3'
miRNA:   3'- -CGGUCGC-GAGCA-------CCGgc--UGGCGa-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.