Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17074 | 3' | -60.1 | NC_004333.2 | + | 44481 | 0.66 | 0.461442 |
Target: 5'- aGCCAGCGagccCGgcaGGCCGuuguACCGCgcacGCGc -3' miRNA: 3'- -CGGUCGCga--GCa--CCGGC----UGGCGa---UGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 9682 | 0.66 | 0.414348 |
Target: 5'- aGCCGGUGCgcaaccGGCCGauGCCGCgcCGg -3' miRNA: 3'- -CGGUCGCGagca--CCGGC--UGGCGauGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 33285 | 0.66 | 0.414348 |
Target: 5'- aGCCgAGCGCgcgCGuUGcGUCGGCCGCa--- -3' miRNA: 3'- -CGG-UCGCGa--GC-AC-CGGCUGGCGaugc -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 11239 | 0.66 | 0.461442 |
Target: 5'- uGCCGGCGCUCGagugcuGCCaGACgGCccaaUGCa -3' miRNA: 3'- -CGGUCGCGAGCac----CGG-CUGgCG----AUGc -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 9602 | 0.66 | 0.414348 |
Target: 5'- aGCCGGCGCggcaucGGCCGGuuGCgcacCGg -3' miRNA: 3'- -CGGUCGCGagca--CCGGCUggCGau--GC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 18386 | 0.66 | 0.414348 |
Target: 5'- cGCCGGCaucauGCUCGU-GCCGuCCGaaGCGc -3' miRNA: 3'- -CGGUCG-----CGAGCAcCGGCuGGCgaUGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 20394 | 0.66 | 0.432835 |
Target: 5'- gGCCguGGcCGCa-GUGGCCGcGCCGCU-CGu -3' miRNA: 3'- -CGG--UC-GCGagCACCGGC-UGGCGAuGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 39057 | 0.66 | 0.439418 |
Target: 5'- aGCCGgacggcgaguacgcGCGaCUCGUGcGCCGugCGUcgGCa -3' miRNA: 3'- -CGGU--------------CGC-GAGCAC-CGGCugGCGa-UGc -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 30496 | 0.66 | 0.442257 |
Target: 5'- aGCCcgAGCGUgc--GGCCGACCagGCUGCc -3' miRNA: 3'- -CGG--UCGCGagcaCCGGCUGG--CGAUGc -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 47558 | 0.66 | 0.422607 |
Target: 5'- gGCCGGCGcCUCGUucagcgcGGCagucGCCGCcgGCGc -3' miRNA: 3'- -CGGUCGC-GAGCA-------CCGgc--UGGCGa-UGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 27350 | 0.66 | 0.430031 |
Target: 5'- cGCCG--GCUCGUGG-CGACCGUucagccaguccgaaUACGa -3' miRNA: 3'- -CGGUcgCGAGCACCgGCUGGCG--------------AUGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 1449 | 0.66 | 0.432835 |
Target: 5'- gGCUucauGCGUUCGUucaaGGCCG-CCGCcgGCa -3' miRNA: 3'- -CGGu---CGCGAGCA----CCGGCuGGCGa-UGc -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 27822 | 0.66 | 0.461442 |
Target: 5'- cGCCugacGgGCUCGgcGGCCGACCagauucgcGCcGCGa -3' miRNA: 3'- -CGGu---CgCGAGCa-CCGGCUGG--------CGaUGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 39005 | 0.66 | 0.45564 |
Target: 5'- uGCCGGuCGCgUCGUGGUucgucucgugcuuguUGGCCGUgcCGa -3' miRNA: 3'- -CGGUC-GCG-AGCACCG---------------GCUGGCGauGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 20589 | 0.66 | 0.451794 |
Target: 5'- cGCCAGCGagcggcgCGgcggcGGCCGGCagcgGUUGCGc -3' miRNA: 3'- -CGGUCGCga-----GCa----CCGGCUGg---CGAUGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 26026 | 0.66 | 0.442257 |
Target: 5'- uCCAGCGCcgCGUacuGGCCGccggcaucgacGCCGC-GCGc -3' miRNA: 3'- cGGUCGCGa-GCA---CCGGC-----------UGGCGaUGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 12450 | 0.66 | 0.442257 |
Target: 5'- cGCCGG-GCggggCGcGGgCGGgCGCUACGg -3' miRNA: 3'- -CGGUCgCGa---GCaCCgGCUgGCGAUGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 42095 | 0.66 | 0.442257 |
Target: 5'- cGCCc-CGCUCGuUGGCCG-CgCGCUucACGc -3' miRNA: 3'- -CGGucGCGAGC-ACCGGCuG-GCGA--UGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 24814 | 0.66 | 0.441309 |
Target: 5'- cGCC-GCGUUCGUGaGCggcuucuCGACCGaugACGg -3' miRNA: 3'- -CGGuCGCGAGCAC-CG-------GCUGGCga-UGC- -5' |
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17074 | 3' | -60.1 | NC_004333.2 | + | 25496 | 0.66 | 0.432835 |
Target: 5'- cCCGGCGUgacggcCGccGCCGGCaCGCUGCa -3' miRNA: 3'- cGGUCGCGa-----GCacCGGCUG-GCGAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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