miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17074 3' -60.1 NC_004333.2 + 15118 1.09 0.00031
Target:  5'- uGCCAGCGCUCGUGGCCGACCGCUACGc -3'
miRNA:   3'- -CGGUCGCGAGCACCGGCUGGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 17634 0.76 0.089063
Target:  5'- cCCGGUGC-CGUGGCCGACaCGUUcGCGa -3'
miRNA:   3'- cGGUCGCGaGCACCGGCUG-GCGA-UGC- -5'
17074 3' -60.1 NC_004333.2 + 15416 0.74 0.134422
Target:  5'- uGCC-GCGCUUaUGGCCGGCgGCaGCGa -3'
miRNA:   3'- -CGGuCGCGAGcACCGGCUGgCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 15856 0.74 0.138106
Target:  5'- aGCCGugcacGCGCUCGUGaCCGACCuGCUgACGc -3'
miRNA:   3'- -CGGU-----CGCGAGCACcGGCUGG-CGA-UGC- -5'
17074 3' -60.1 NC_004333.2 + 2975 0.74 0.141499
Target:  5'- gGCCGG-GCuUCGUGGCgCGgacagcuGCCGCUGCGc -3'
miRNA:   3'- -CGGUCgCG-AGCACCG-GC-------UGGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 10492 0.73 0.157944
Target:  5'- cGCCAcGCGC-CG-GGCCGGCCGacgaGCGg -3'
miRNA:   3'- -CGGU-CGCGaGCaCCGGCUGGCga--UGC- -5'
17074 3' -60.1 NC_004333.2 + 19433 0.73 0.166578
Target:  5'- -gCGGCGCUCGcgcaguugcUGGCCGACCugcguuuCUACGg -3'
miRNA:   3'- cgGUCGCGAGC---------ACCGGCUGGc------GAUGC- -5'
17074 3' -60.1 NC_004333.2 + 8961 0.72 0.180323
Target:  5'- cGCguGCGCgggcuggaUCGUgGGCCGugCGCgGCGg -3'
miRNA:   3'- -CGguCGCG--------AGCA-CCGGCugGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 13919 0.72 0.185124
Target:  5'- uGCCguGGCGaUCGUGGCCGcuGCCGCcaGCGu -3'
miRNA:   3'- -CGG--UCGCgAGCACCGGC--UGGCGa-UGC- -5'
17074 3' -60.1 NC_004333.2 + 19510 0.72 0.190036
Target:  5'- uGgCGGCGCUCGUGGCCGuaugggcaAUCGUUcGCa -3'
miRNA:   3'- -CgGUCGCGAGCACCGGC--------UGGCGA-UGc -5'
17074 3' -60.1 NC_004333.2 + 19717 0.71 0.216348
Target:  5'- uGCuCGGCGCUgGUGGCgUGcaagacggcGCCGCUGCc -3'
miRNA:   3'- -CG-GUCGCGAgCACCG-GC---------UGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 28872 0.71 0.227718
Target:  5'- cGCUcaAGCGCUCGUGccGCgCGAUCGCgcucgGCGc -3'
miRNA:   3'- -CGG--UCGCGAGCAC--CG-GCUGGCGa----UGC- -5'
17074 3' -60.1 NC_004333.2 + 12071 0.71 0.227718
Target:  5'- cGCCAaccuuGCGUaCGUGGCUGGCgCGCaGCGc -3'
miRNA:   3'- -CGGU-----CGCGaGCACCGGCUG-GCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 20364 0.71 0.227718
Target:  5'- cGCCGGCugGCuUCGUGGUCGACUaCUcgGCGg -3'
miRNA:   3'- -CGGUCG--CG-AGCACCGGCUGGcGA--UGC- -5'
17074 3' -60.1 NC_004333.2 + 8901 0.7 0.23959
Target:  5'- aGCCAaccugcgaucGCGCgcgCGUGcgccuGCCGGCCGCU-CGg -3'
miRNA:   3'- -CGGU----------CGCGa--GCAC-----CGGCUGGCGAuGC- -5'
17074 3' -60.1 NC_004333.2 + 47469 0.7 0.23959
Target:  5'- cGCCacGGCGCUCGcGGgCGGCgGC-ACGa -3'
miRNA:   3'- -CGG--UCGCGAGCaCCgGCUGgCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 25645 0.7 0.258362
Target:  5'- cGUCAGCGCggucgaaagCGUcuuGCCGGCCGUcGCGa -3'
miRNA:   3'- -CGGUCGCGa--------GCAc--CGGCUGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 12293 0.7 0.258362
Target:  5'- gGCguGCGCgUCGcaacgGGCCGGCUcuGCUugGa -3'
miRNA:   3'- -CGguCGCG-AGCa----CCGGCUGG--CGAugC- -5'
17074 3' -60.1 NC_004333.2 + 13881 0.69 0.271533
Target:  5'- cGCC-GCGCgaaGUcGGCCGGCacggGCUGCGc -3'
miRNA:   3'- -CGGuCGCGag-CA-CCGGCUGg---CGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 37673 0.69 0.271533
Target:  5'- cGCCcgaccCGCUCGUcGGCCGGCCcggcGCgugGCGg -3'
miRNA:   3'- -CGGuc---GCGAGCA-CCGGCUGG----CGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.