miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17074 3' -60.1 NC_004333.2 + 18386 0.66 0.414348
Target:  5'- cGCCGGCaucauGCUCGU-GCCGuCCGaaGCGc -3'
miRNA:   3'- -CGGUCG-----CGAGCAcCGGCuGGCgaUGC- -5'
17074 3' -60.1 NC_004333.2 + 33285 0.66 0.414348
Target:  5'- aGCCgAGCGCgcgCGuUGcGUCGGCCGCa--- -3'
miRNA:   3'- -CGG-UCGCGa--GC-AC-CGGCUGGCGaugc -5'
17074 3' -60.1 NC_004333.2 + 9602 0.66 0.414348
Target:  5'- aGCCGGCGCggcaucGGCCGGuuGCgcacCGg -3'
miRNA:   3'- -CGGUCGCGagca--CCGGCUggCGau--GC- -5'
17074 3' -60.1 NC_004333.2 + 9682 0.66 0.414348
Target:  5'- aGCCGGUGCgcaaccGGCCGauGCCGCgcCGg -3'
miRNA:   3'- -CGGUCGCGagca--CCGGC--UGGCGauGC- -5'
17074 3' -60.1 NC_004333.2 + 30049 0.67 0.405288
Target:  5'- cGCuCGGCGC-CgGUGGCagcgCGGCCGCgcuCGg -3'
miRNA:   3'- -CG-GUCGCGaG-CACCG----GCUGGCGau-GC- -5'
17074 3' -60.1 NC_004333.2 + 42766 0.67 0.402594
Target:  5'- cGCCGccCGCUCGUcGGCCGGCguggagacgaucggCGCUguuGCGg -3'
miRNA:   3'- -CGGUc-GCGAGCA-CCGGCUG--------------GCGA---UGC- -5'
17074 3' -60.1 NC_004333.2 + 14775 0.67 0.399912
Target:  5'- uGCCgcuuGGCGCacUCGUgccacaccugcacucGGCCGACaaGCUGCGc -3'
miRNA:   3'- -CGG----UCGCG--AGCA---------------CCGGCUGg-CGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 40323 0.67 0.399912
Target:  5'- aGUCAGaaagGUUCGaauucgucgaucgguUGGCCGGCCGCgucGCGc -3'
miRNA:   3'- -CGGUCg---CGAGC---------------ACCGGCUGGCGa--UGC- -5'
17074 3' -60.1 NC_004333.2 + 29121 0.67 0.396354
Target:  5'- cUCGGCGCgaUCGUGGgCGGCgCGgUGCu -3'
miRNA:   3'- cGGUCGCG--AGCACCgGCUG-GCgAUGc -5'
17074 3' -60.1 NC_004333.2 + 32242 0.67 0.387548
Target:  5'- cUCGGCGaguaagcgCGUGGCCGGCCuGCcgACa -3'
miRNA:   3'- cGGUCGCga------GCACCGGCUGG-CGa-UGc -5'
17074 3' -60.1 NC_004333.2 + 17144 0.67 0.386674
Target:  5'- -gCAGCGCaugcgcgaggaagUCGUGcGCgucgacaaGGCCGCUGCGa -3'
miRNA:   3'- cgGUCGCG-------------AGCAC-CGg-------CUGGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 2991 0.67 0.378871
Target:  5'- uGCCuAGaCGCUCGccGGCgCGuCCGCcGCGa -3'
miRNA:   3'- -CGG-UC-GCGAGCa-CCG-GCuGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 36822 0.67 0.370326
Target:  5'- uGCCGucgagugcGCGCUaCGgccaucGCCGGCCGCUAUc -3'
miRNA:   3'- -CGGU--------CGCGA-GCac----CGGCUGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 33375 0.67 0.370326
Target:  5'- cGCCGGUugGCUCGaugcGGCCGAC-GCaACGc -3'
miRNA:   3'- -CGGUCG--CGAGCa---CCGGCUGgCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 8692 0.67 0.370326
Target:  5'- aGCaCGGCGaaCGU-GCCGACCGUgACGc -3'
miRNA:   3'- -CG-GUCGCgaGCAcCGGCUGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 38832 0.67 0.361914
Target:  5'- aGCuCGGCgaugccGCUCGUGGCCGcuuccAUCGUcaUGCGg -3'
miRNA:   3'- -CG-GUCG------CGAGCACCGGC-----UGGCG--AUGC- -5'
17074 3' -60.1 NC_004333.2 + 19561 0.67 0.359416
Target:  5'- cGCCAGCGCgccaGcGCCGAUCGCauagaacuggaucaUGCGg -3'
miRNA:   3'- -CGGUCGCGagcaC-CGGCUGGCG--------------AUGC- -5'
17074 3' -60.1 NC_004333.2 + 5869 0.68 0.353635
Target:  5'- cGCCA-CGCcCGUGGU--GCCGCUGCc -3'
miRNA:   3'- -CGGUcGCGaGCACCGgcUGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 20214 0.68 0.353635
Target:  5'- gGCUcGCGCuuUCGUGGCggcgauCGACCGCgACu -3'
miRNA:   3'- -CGGuCGCG--AGCACCG------GCUGGCGaUGc -5'
17074 3' -60.1 NC_004333.2 + 11945 0.68 0.345491
Target:  5'- uGCUcGCGCcCGUuucGGCCGACCgGCagACGg -3'
miRNA:   3'- -CGGuCGCGaGCA---CCGGCUGG-CGa-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.