miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17074 3' -60.1 NC_004333.2 + 717 0.68 0.336689
Target:  5'- cGCgAGCGC-CGUGGCgaGguugauuGCCGUUGCGc -3'
miRNA:   3'- -CGgUCGCGaGCACCGg-C-------UGGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 1449 0.66 0.432835
Target:  5'- gGCUucauGCGUUCGUucaaGGCCG-CCGCcgGCa -3'
miRNA:   3'- -CGGu---CGCGAGCA----CCGGCuGGCGa-UGc -5'
17074 3' -60.1 NC_004333.2 + 2400 0.68 0.314274
Target:  5'- cGCCGGCGgUCGccUGGUCG-CCGUacaGCGg -3'
miRNA:   3'- -CGGUCGCgAGC--ACCGGCuGGCGa--UGC- -5'
17074 3' -60.1 NC_004333.2 + 2975 0.74 0.141499
Target:  5'- gGCCGG-GCuUCGUGGCgCGgacagcuGCCGCUGCGc -3'
miRNA:   3'- -CGGUCgCG-AGCACCG-GC-------UGGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 2991 0.67 0.378871
Target:  5'- uGCCuAGaCGCUCGccGGCgCGuCCGCcGCGa -3'
miRNA:   3'- -CGG-UC-GCGAGCa-CCG-GCuGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 3650 0.68 0.343075
Target:  5'- cGCgaAGUGCUCGgggugaucGGCCGGCguccaguccggguuCGCUGCGa -3'
miRNA:   3'- -CGg-UCGCGAGCa-------CCGGCUG--------------GCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 5869 0.68 0.353635
Target:  5'- cGCCA-CGCcCGUGGU--GCCGCUGCc -3'
miRNA:   3'- -CGGUcGCGaGCACCGgcUGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 6834 0.66 0.442257
Target:  5'- uCCGGCGgggcaCUCGUcGGCuacCGGCgGCUGCGc -3'
miRNA:   3'- cGGUCGC-----GAGCA-CCG---GCUGgCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 8692 0.67 0.370326
Target:  5'- aGCaCGGCGaaCGU-GCCGACCGUgACGc -3'
miRNA:   3'- -CG-GUCGCgaGCAcCGGCUGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 8901 0.7 0.23959
Target:  5'- aGCCAaccugcgaucGCGCgcgCGUGcgccuGCCGGCCGCU-CGg -3'
miRNA:   3'- -CGGU----------CGCGa--GCAC-----CGGCUGGCGAuGC- -5'
17074 3' -60.1 NC_004333.2 + 8961 0.72 0.180323
Target:  5'- cGCguGCGCgggcuggaUCGUgGGCCGugCGCgGCGg -3'
miRNA:   3'- -CGguCGCG--------AGCA-CCGGCugGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 9602 0.66 0.414348
Target:  5'- aGCCGGCGCggcaucGGCCGGuuGCgcacCGg -3'
miRNA:   3'- -CGGUCGCGagca--CCGGCUggCGau--GC- -5'
17074 3' -60.1 NC_004333.2 + 9682 0.66 0.414348
Target:  5'- aGCCGGUGCgcaaccGGCCGauGCCGCgcCGg -3'
miRNA:   3'- -CGGUCGCGagca--CCGGC--UGGCGauGC- -5'
17074 3' -60.1 NC_004333.2 + 10492 0.73 0.157944
Target:  5'- cGCCAcGCGC-CG-GGCCGGCCGacgaGCGg -3'
miRNA:   3'- -CGGU-CGCGaGCaCCGGCUGGCga--UGC- -5'
17074 3' -60.1 NC_004333.2 + 11239 0.66 0.461442
Target:  5'- uGCCGGCGCUCGagugcuGCCaGACgGCccaaUGCa -3'
miRNA:   3'- -CGGUCGCGAGCac----CGG-CUGgCG----AUGc -5'
17074 3' -60.1 NC_004333.2 + 11945 0.68 0.345491
Target:  5'- uGCUcGCGCcCGUuucGGCCGACCgGCagACGg -3'
miRNA:   3'- -CGGuCGCGaGCA---CCGGCUGG-CGa-UGC- -5'
17074 3' -60.1 NC_004333.2 + 12071 0.71 0.227718
Target:  5'- cGCCAaccuuGCGUaCGUGGCUGGCgCGCaGCGc -3'
miRNA:   3'- -CGGU-----CGCGaGCACCGGCUG-GCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 12293 0.7 0.258362
Target:  5'- gGCguGCGCgUCGcaacgGGCCGGCUcuGCUugGa -3'
miRNA:   3'- -CGguCGCG-AGCa----CCGGCUGG--CGAugC- -5'
17074 3' -60.1 NC_004333.2 + 12450 0.66 0.442257
Target:  5'- cGCCGG-GCggggCGcGGgCGGgCGCUACGg -3'
miRNA:   3'- -CGGUCgCGa---GCaCCgGCUgGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 13881 0.69 0.271533
Target:  5'- cGCC-GCGCgaaGUcGGCCGGCacggGCUGCGc -3'
miRNA:   3'- -CGGuCGCGag-CA-CCGGCUGg---CGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.