miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17074 3' -60.1 NC_004333.2 + 17634 0.76 0.089063
Target:  5'- cCCGGUGC-CGUGGCCGACaCGUUcGCGa -3'
miRNA:   3'- cGGUCGCGaGCACCGGCUG-GCGA-UGC- -5'
17074 3' -60.1 NC_004333.2 + 36822 0.67 0.370326
Target:  5'- uGCCGucgagugcGCGCUaCGgccaucGCCGGCCGCUAUc -3'
miRNA:   3'- -CGGU--------CGCGA-GCac----CGGCUGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 17144 0.67 0.386674
Target:  5'- -gCAGCGCaugcgcgaggaagUCGUGcGCgucgacaaGGCCGCUGCGa -3'
miRNA:   3'- cgGUCGCG-------------AGCAC-CGg-------CUGGCGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 11239 0.66 0.461442
Target:  5'- uGCCGGCGCUCGagugcuGCCaGACgGCccaaUGCa -3'
miRNA:   3'- -CGGUCGCGAGCac----CGG-CUGgCG----AUGc -5'
17074 3' -60.1 NC_004333.2 + 19717 0.71 0.216348
Target:  5'- uGCuCGGCGCUgGUGGCgUGcaagacggcGCCGCUGCc -3'
miRNA:   3'- -CG-GUCGCGAgCACCG-GC---------UGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 28872 0.71 0.227718
Target:  5'- cGCUcaAGCGCUCGUGccGCgCGAUCGCgcucgGCGc -3'
miRNA:   3'- -CGG--UCGCGAGCAC--CG-GCUGGCGa----UGC- -5'
17074 3' -60.1 NC_004333.2 + 13881 0.69 0.271533
Target:  5'- cGCC-GCGCgaaGUcGGCCGGCacggGCUGCGc -3'
miRNA:   3'- -CGGuCGCGag-CA-CCGGCUGg---CGAUGC- -5'
17074 3' -60.1 NC_004333.2 + 37673 0.69 0.271533
Target:  5'- cGCCcgaccCGCUCGUcGGCCGGCCcggcGCgugGCGg -3'
miRNA:   3'- -CGGuc---GCGAGCA-CCGGCUGG----CGa--UGC- -5'
17074 3' -60.1 NC_004333.2 + 2400 0.68 0.314274
Target:  5'- cGCCGGCGgUCGccUGGUCG-CCGUacaGCGg -3'
miRNA:   3'- -CGGUCGCgAGC--ACCGGCuGGCGa--UGC- -5'
17074 3' -60.1 NC_004333.2 + 8692 0.67 0.370326
Target:  5'- aGCaCGGCGaaCGU-GCCGACCGUgACGc -3'
miRNA:   3'- -CG-GUCGCgaGCAcCGGCUGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 39796 0.68 0.337483
Target:  5'- cGCCGcucGCGCU-GUGGCCGuCCGaacGCGc -3'
miRNA:   3'- -CGGU---CGCGAgCACCGGCuGGCga-UGC- -5'
17074 3' -60.1 NC_004333.2 + 43301 0.69 0.299484
Target:  5'- gGCUAuGCGCUCGU-GCCGAUCGagccgACGc -3'
miRNA:   3'- -CGGU-CGCGAGCAcCGGCUGGCga---UGC- -5'
17074 3' -60.1 NC_004333.2 + 8961 0.72 0.180323
Target:  5'- cGCguGCGCgggcuggaUCGUgGGCCGugCGCgGCGg -3'
miRNA:   3'- -CGguCGCG--------AGCA-CCGGCugGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 5869 0.68 0.353635
Target:  5'- cGCCA-CGCcCGUGGU--GCCGCUGCc -3'
miRNA:   3'- -CGGUcGCGaGCACCGgcUGGCGAUGc -5'
17074 3' -60.1 NC_004333.2 + 13919 0.72 0.185124
Target:  5'- uGCCguGGCGaUCGUGGCCGcuGCCGCcaGCGu -3'
miRNA:   3'- -CGG--UCGCgAGCACCGGC--UGGCGa-UGC- -5'
17074 3' -60.1 NC_004333.2 + 45730 0.69 0.271533
Target:  5'- cCCGGCGCgaaCGU-GCCGAUCGCgauaUACGa -3'
miRNA:   3'- cGGUCGCGa--GCAcCGGCUGGCG----AUGC- -5'
17074 3' -60.1 NC_004333.2 + 20214 0.68 0.353635
Target:  5'- gGCUcGCGCuuUCGUGGCggcgauCGACCGCgACu -3'
miRNA:   3'- -CGGuCGCG--AGCACCG------GCUGGCGaUGc -5'
17074 3' -60.1 NC_004333.2 + 2991 0.67 0.378871
Target:  5'- uGCCuAGaCGCUCGccGGCgCGuCCGCcGCGa -3'
miRNA:   3'- -CGG-UC-GCGAGCa-CCG-GCuGGCGaUGC- -5'
17074 3' -60.1 NC_004333.2 + 19510 0.72 0.190036
Target:  5'- uGgCGGCGCUCGUGGCCGuaugggcaAUCGUUcGCa -3'
miRNA:   3'- -CgGUCGCGAGCACCGGC--------UGGCGA-UGc -5'
17074 3' -60.1 NC_004333.2 + 25645 0.7 0.258362
Target:  5'- cGUCAGCGCggucgaaagCGUcuuGCCGGCCGUcGCGa -3'
miRNA:   3'- -CGGUCGCGa--------GCAc--CGGCUGGCGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.