miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17075 3' -61.1 NC_004333.2 + 11818 0.67 0.318254
Target:  5'- cGGCCaucaGCGcGACGGCGCGcuccagcUUGCGCCGg -3'
miRNA:   3'- -UUGGg---CGUcCUGUCGCGC-------AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 29480 0.67 0.311434
Target:  5'- cAGCgCCGC--GACGGCgaacgGCGUUACGCCGu -3'
miRNA:   3'- -UUG-GGCGucCUGUCG-----CGCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 47882 0.67 0.311434
Target:  5'- -gUCCGCAGG-CGGCGCGcugCACGaUCa -3'
miRNA:   3'- uuGGGCGUCCuGUCGCGCa--GUGC-GGc -5'
17075 3' -61.1 NC_004333.2 + 5197 0.67 0.303987
Target:  5'- cGCCUGCAGGcGCGGCGuCGgCACcGUCGc -3'
miRNA:   3'- uUGGGCGUCC-UGUCGC-GCaGUG-CGGC- -5'
17075 3' -61.1 NC_004333.2 + 20545 0.67 0.30325
Target:  5'- --gCCGcCGGGACgcuaaccGGCuGCGUCACGaCCGg -3'
miRNA:   3'- uugGGC-GUCCUG-------UCG-CGCAGUGC-GGC- -5'
17075 3' -61.1 NC_004333.2 + 45739 0.67 0.30325
Target:  5'- cGCCCGCucgguAGGugcaugcGCAGCGCG-CGCGCg- -3'
miRNA:   3'- uUGGGCG-----UCC-------UGUCGCGCaGUGCGgc -5'
17075 3' -61.1 NC_004333.2 + 11910 0.67 0.296678
Target:  5'- cGGCCCgGCAuGcgcaGCGGCGCG-CGCGCCa -3'
miRNA:   3'- -UUGGG-CGUcC----UGUCGCGCaGUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 31085 0.67 0.296678
Target:  5'- cGCCUGCAGGuuCGGCGC--CugGCCc -3'
miRNA:   3'- uUGGGCGUCCu-GUCGCGcaGugCGGc -5'
17075 3' -61.1 NC_004333.2 + 29124 0.67 0.295954
Target:  5'- cAACUCgGCGcgaucguGGGCGGCGCGgugcUCGCGCUGg -3'
miRNA:   3'- -UUGGG-CGU-------CCUGUCGCGC----AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 13751 0.68 0.289506
Target:  5'- gAGCgCGUAGGACGccGCGCGccgcUCGCGCgGc -3'
miRNA:   3'- -UUGgGCGUCCUGU--CGCGC----AGUGCGgC- -5'
17075 3' -61.1 NC_004333.2 + 45020 0.68 0.275571
Target:  5'- --gCCGCucGACcGCGCGUgGCGCUGg -3'
miRNA:   3'- uugGGCGucCUGuCGCGCAgUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 14074 0.68 0.268807
Target:  5'- -gUgCGCAGGcaaagcugauGCAGCGCGaucgUCAUGCCGu -3'
miRNA:   3'- uuGgGCGUCC----------UGUCGCGC----AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 15502 0.68 0.255682
Target:  5'- uGCUCGCGGcggucaccGGCGGCGCGUCAaGCgCGa -3'
miRNA:   3'- uUGGGCGUC--------CUGUCGCGCAGUgCG-GC- -5'
17075 3' -61.1 NC_004333.2 + 9022 0.68 0.25504
Target:  5'- cAGCCCGCGcacgcgauGGACAGCGCcggcgcgaacgaaGcCGCGUCGc -3'
miRNA:   3'- -UUGGGCGU--------CCUGUCGCG-------------CaGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 3555 0.69 0.249319
Target:  5'- gGugCCGC---GCAGCGCGUCG-GCCGa -3'
miRNA:   3'- -UugGGCGuccUGUCGCGCAGUgCGGC- -5'
17075 3' -61.1 NC_004333.2 + 1345 0.69 0.243087
Target:  5'- cAACCgCGcCAGG-CGGCGCGccaaggagcacgUCAUGCCGu -3'
miRNA:   3'- -UUGG-GC-GUCCuGUCGCGC------------AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 20815 0.69 0.236985
Target:  5'- cAGCCgCGuCGGcgauguccGGCAGCGCG-CGCGCCGu -3'
miRNA:   3'- -UUGG-GC-GUC--------CUGUCGCGCaGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 28832 0.69 0.231013
Target:  5'- cGACCCGCGcGGucgacGCGGCGC-UCGCGCa- -3'
miRNA:   3'- -UUGGGCGU-CC-----UGUCGCGcAGUGCGgc -5'
17075 3' -61.1 NC_004333.2 + 20655 0.69 0.225167
Target:  5'- cGCCUGCAGaaacaccACGGCGCGacccgaCGCGCCGa -3'
miRNA:   3'- uUGGGCGUCc------UGUCGCGCa-----GUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 3798 0.69 0.225167
Target:  5'- uGAUCCGCccGGGGguGCGCGagGCGCUc -3'
miRNA:   3'- -UUGGGCG--UCCUguCGCGCagUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.