Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17075 | 5' | -51.8 | NC_004333.2 | + | 13910 | 0.66 | 0.861267 |
Target: 5'- cGCGGCGGcugccGUGGcgauCGugGCCgCUGCc -3' miRNA: 3'- aUGCCGUC-----UACUau--GCugUGGaGACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 41635 | 0.66 | 0.852598 |
Target: 5'- gGCGGCAGAUuGUcgGGCGCgggCUGCg -3' miRNA: 3'- aUGCCGUCUAcUAugCUGUGga-GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 22974 | 0.66 | 0.852598 |
Target: 5'- aGCGGCAGc----ACcGCGCUUCUGCu -3' miRNA: 3'- aUGCCGUCuacuaUGcUGUGGAGACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 9539 | 0.66 | 0.84368 |
Target: 5'- -uCGGCGGc-GGUGCGGCACC-C-GCg -3' miRNA: 3'- auGCCGUCuaCUAUGCUGUGGaGaCG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 42980 | 0.66 | 0.84368 |
Target: 5'- -cCGGCGGAcGAgcggGCGGCGCuCUCgaccgaugGCu -3' miRNA: 3'- auGCCGUCUaCUa---UGCUGUG-GAGa-------CG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 7297 | 0.66 | 0.84368 |
Target: 5'- aACgGGCGGAaGAUcACGGCACCccacgugcCUGCc -3' miRNA: 3'- aUG-CCGUCUaCUA-UGCUGUGGa-------GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 27298 | 0.66 | 0.84368 |
Target: 5'- -cCGGCGaaaccGAUGAUGCGGC-CaggCUGCc -3' miRNA: 3'- auGCCGU-----CUACUAUGCUGuGga-GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 30384 | 0.66 | 0.84368 |
Target: 5'- gUAUGGCGGGUGGUGucgcaGGCGCgaCgGCg -3' miRNA: 3'- -AUGCCGUCUACUAUg----CUGUGgaGaCG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 33398 | 0.66 | 0.82513 |
Target: 5'- aACGGC-GAUGccUGCGGCGCagcgaCUGCg -3' miRNA: 3'- aUGCCGuCUACu-AUGCUGUGga---GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 7576 | 0.67 | 0.805699 |
Target: 5'- gGCGGCAGAcccAUGCGcaggACGuCCUcCUGCg -3' miRNA: 3'- aUGCCGUCUac-UAUGC----UGU-GGA-GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 3943 | 0.67 | 0.78548 |
Target: 5'- -cCGGCAGGU----UGGCGCCguUCUGCa -3' miRNA: 3'- auGCCGUCUAcuauGCUGUGG--AGACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 3990 | 0.67 | 0.764569 |
Target: 5'- uUGCGGCguuuAGcUGcUGCGugACCUCgaagGCg -3' miRNA: 3'- -AUGCCG----UCuACuAUGCugUGGAGa---CG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 22190 | 0.68 | 0.753885 |
Target: 5'- gGCGGCGGuucg-GCGGCugCggcCUGCu -3' miRNA: 3'- aUGCCGUCuacuaUGCUGugGa--GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 46830 | 0.68 | 0.709935 |
Target: 5'- cGCGGCGGAcacuuCGACGCCgagUGCg -3' miRNA: 3'- aUGCCGUCUacuauGCUGUGGag-ACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 6742 | 0.69 | 0.676057 |
Target: 5'- aGCGGCGGAUGc-GCGcCugCUCgaGCg -3' miRNA: 3'- aUGCCGUCUACuaUGCuGugGAGa-CG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 2426 | 0.69 | 0.664657 |
Target: 5'- aGCGGCAGcgugccuUGGUACGGCGCggcgaacacCUGCg -3' miRNA: 3'- aUGCCGUCu------ACUAUGCUGUGga-------GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 36410 | 0.7 | 0.638332 |
Target: 5'- uUACGGCaaucuugcaaccguAGgcGAUGCGACGCC-CgGCg -3' miRNA: 3'- -AUGCCG--------------UCuaCUAUGCUGUGGaGaCG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 13971 | 0.71 | 0.584578 |
Target: 5'- gGCGGCGGccGGUGCG-CGCgagCUGCg -3' miRNA: 3'- aUGCCGUCuaCUAUGCuGUGga-GACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 45090 | 0.72 | 0.485012 |
Target: 5'- aACGGCGGAcugcgaggcGAUAcuCGACGCCugUCUGCg -3' miRNA: 3'- aUGCCGUCUa--------CUAU--GCUGUGG--AGACG- -5' |
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17075 | 5' | -51.8 | NC_004333.2 | + | 35062 | 1.11 | 0.001186 |
Target: 5'- gUACGGCAGAUGAUACGACACCUCUGCa -3' miRNA: 3'- -AUGCCGUCUACUAUGCUGUGGAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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