miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17075 5' -51.8 NC_004333.2 + 13910 0.66 0.861267
Target:  5'- cGCGGCGGcugccGUGGcgauCGugGCCgCUGCc -3'
miRNA:   3'- aUGCCGUC-----UACUau--GCugUGGaGACG- -5'
17075 5' -51.8 NC_004333.2 + 41635 0.66 0.852598
Target:  5'- gGCGGCAGAUuGUcgGGCGCgggCUGCg -3'
miRNA:   3'- aUGCCGUCUAcUAugCUGUGga-GACG- -5'
17075 5' -51.8 NC_004333.2 + 22974 0.66 0.852598
Target:  5'- aGCGGCAGc----ACcGCGCUUCUGCu -3'
miRNA:   3'- aUGCCGUCuacuaUGcUGUGGAGACG- -5'
17075 5' -51.8 NC_004333.2 + 9539 0.66 0.84368
Target:  5'- -uCGGCGGc-GGUGCGGCACC-C-GCg -3'
miRNA:   3'- auGCCGUCuaCUAUGCUGUGGaGaCG- -5'
17075 5' -51.8 NC_004333.2 + 42980 0.66 0.84368
Target:  5'- -cCGGCGGAcGAgcggGCGGCGCuCUCgaccgaugGCu -3'
miRNA:   3'- auGCCGUCUaCUa---UGCUGUG-GAGa-------CG- -5'
17075 5' -51.8 NC_004333.2 + 7297 0.66 0.84368
Target:  5'- aACgGGCGGAaGAUcACGGCACCccacgugcCUGCc -3'
miRNA:   3'- aUG-CCGUCUaCUA-UGCUGUGGa-------GACG- -5'
17075 5' -51.8 NC_004333.2 + 27298 0.66 0.84368
Target:  5'- -cCGGCGaaaccGAUGAUGCGGC-CaggCUGCc -3'
miRNA:   3'- auGCCGU-----CUACUAUGCUGuGga-GACG- -5'
17075 5' -51.8 NC_004333.2 + 30384 0.66 0.84368
Target:  5'- gUAUGGCGGGUGGUGucgcaGGCGCgaCgGCg -3'
miRNA:   3'- -AUGCCGUCUACUAUg----CUGUGgaGaCG- -5'
17075 5' -51.8 NC_004333.2 + 33398 0.66 0.82513
Target:  5'- aACGGC-GAUGccUGCGGCGCagcgaCUGCg -3'
miRNA:   3'- aUGCCGuCUACu-AUGCUGUGga---GACG- -5'
17075 5' -51.8 NC_004333.2 + 7576 0.67 0.805699
Target:  5'- gGCGGCAGAcccAUGCGcaggACGuCCUcCUGCg -3'
miRNA:   3'- aUGCCGUCUac-UAUGC----UGU-GGA-GACG- -5'
17075 5' -51.8 NC_004333.2 + 3943 0.67 0.78548
Target:  5'- -cCGGCAGGU----UGGCGCCguUCUGCa -3'
miRNA:   3'- auGCCGUCUAcuauGCUGUGG--AGACG- -5'
17075 5' -51.8 NC_004333.2 + 3990 0.67 0.764569
Target:  5'- uUGCGGCguuuAGcUGcUGCGugACCUCgaagGCg -3'
miRNA:   3'- -AUGCCG----UCuACuAUGCugUGGAGa---CG- -5'
17075 5' -51.8 NC_004333.2 + 22190 0.68 0.753885
Target:  5'- gGCGGCGGuucg-GCGGCugCggcCUGCu -3'
miRNA:   3'- aUGCCGUCuacuaUGCUGugGa--GACG- -5'
17075 5' -51.8 NC_004333.2 + 46830 0.68 0.709935
Target:  5'- cGCGGCGGAcacuuCGACGCCgagUGCg -3'
miRNA:   3'- aUGCCGUCUacuauGCUGUGGag-ACG- -5'
17075 5' -51.8 NC_004333.2 + 6742 0.69 0.676057
Target:  5'- aGCGGCGGAUGc-GCGcCugCUCgaGCg -3'
miRNA:   3'- aUGCCGUCUACuaUGCuGugGAGa-CG- -5'
17075 5' -51.8 NC_004333.2 + 2426 0.69 0.664657
Target:  5'- aGCGGCAGcgugccuUGGUACGGCGCggcgaacacCUGCg -3'
miRNA:   3'- aUGCCGUCu------ACUAUGCUGUGga-------GACG- -5'
17075 5' -51.8 NC_004333.2 + 36410 0.7 0.638332
Target:  5'- uUACGGCaaucuugcaaccguAGgcGAUGCGACGCC-CgGCg -3'
miRNA:   3'- -AUGCCG--------------UCuaCUAUGCUGUGGaGaCG- -5'
17075 5' -51.8 NC_004333.2 + 13971 0.71 0.584578
Target:  5'- gGCGGCGGccGGUGCG-CGCgagCUGCg -3'
miRNA:   3'- aUGCCGUCuaCUAUGCuGUGga-GACG- -5'
17075 5' -51.8 NC_004333.2 + 45090 0.72 0.485012
Target:  5'- aACGGCGGAcugcgaggcGAUAcuCGACGCCugUCUGCg -3'
miRNA:   3'- aUGCCGUCUa--------CUAU--GCUGUGG--AGACG- -5'
17075 5' -51.8 NC_004333.2 + 35062 1.11 0.001186
Target:  5'- gUACGGCAGAUGAUACGACACCUCUGCa -3'
miRNA:   3'- -AUGCCGUCUACUAUGCUGUGGAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.