miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17076 3' -50.8 NC_004333.2 + 9999 0.66 0.901111
Target:  5'- uGCGCGGguugUCGGCCGu--CUGCGCg- -3'
miRNA:   3'- -CGUGUCaa--AGCUGGUuacGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 21959 0.66 0.901111
Target:  5'- uGCGCAGaaaCGACaaacgGCCcGCACUGc -3'
miRNA:   3'- -CGUGUCaaaGCUGguua-CGG-CGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 3541 0.66 0.901111
Target:  5'- -aGCGGgaUCaACgCGGUGCCGCGCa- -3'
miRNA:   3'- cgUGUCaaAGcUG-GUUACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 45126 0.66 0.893802
Target:  5'- gGCAUcGUcaacggCGGCCAGcUGCCGUACg- -3'
miRNA:   3'- -CGUGuCAaa----GCUGGUU-ACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 17540 0.66 0.893802
Target:  5'- aGCGCAcgccgCG-CCu-UGCCGCGCUGc -3'
miRNA:   3'- -CGUGUcaaa-GCuGGuuACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 19781 0.66 0.886204
Target:  5'- cGCACGGgaUCGugCcgcgcguugAGUGCgaUGCGCUGc -3'
miRNA:   3'- -CGUGUCaaAGCugG---------UUACG--GCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 8963 0.66 0.886204
Target:  5'- aCGCAGc-UCGGCCGAcgggagcgcggGCCGUGCUGc -3'
miRNA:   3'- cGUGUCaaAGCUGGUUa----------CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 44401 0.66 0.886204
Target:  5'- uGCGCGGUacaaCGGCC--UGCCGgGCUc -3'
miRNA:   3'- -CGUGUCAaa--GCUGGuuACGGCgUGAc -5'
17076 3' -50.8 NC_004333.2 + 39775 0.66 0.870161
Target:  5'- -uGCAGUggacgaucCGACCGAcGCCGCucgcGCUGu -3'
miRNA:   3'- cgUGUCAaa------GCUGGUUaCGGCG----UGAC- -5'
17076 3' -50.8 NC_004333.2 + 13884 0.66 0.870161
Target:  5'- cGCGCGaagUCGGCCGGcacggGCUGCGCg- -3'
miRNA:   3'- -CGUGUcaaAGCUGGUUa----CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 9960 0.66 0.86933
Target:  5'- cGCGCuugcucgacucggGGUUUCGAUCAGU-CCGCAgaGc -3'
miRNA:   3'- -CGUG-------------UCAAAGCUGGUUAcGGCGUgaC- -5'
17076 3' -50.8 NC_004333.2 + 31174 0.67 0.86173
Target:  5'- aGCGCGGcgaCGGCguAUGCCGCGa-- -3'
miRNA:   3'- -CGUGUCaaaGCUGguUACGGCGUgac -5'
17076 3' -50.8 NC_004333.2 + 24871 0.67 0.853037
Target:  5'- uCGCAGggacgUUGACCAGUGCgCuuaCACUGg -3'
miRNA:   3'- cGUGUCaa---AGCUGGUUACG-Gc--GUGAC- -5'
17076 3' -50.8 NC_004333.2 + 3298 0.67 0.853037
Target:  5'- gGCGCAGcgagUCGGgCAGguUGUCGCGCg- -3'
miRNA:   3'- -CGUGUCaa--AGCUgGUU--ACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 29872 0.67 0.844997
Target:  5'- cGCGCGGUagucgUCGGCgAAgcgcugcgcgaucggGCCGCGCg- -3'
miRNA:   3'- -CGUGUCAa----AGCUGgUUa--------------CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 3614 0.67 0.844091
Target:  5'- cGCGuCGGUgUCGAUCAGUG-CGUACUu -3'
miRNA:   3'- -CGU-GUCAaAGCUGGUUACgGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 16652 0.67 0.844091
Target:  5'- uGCgACAGcacUUCGACCugcccGGUGCUGCACc- -3'
miRNA:   3'- -CG-UGUCa--AAGCUGG-----UUACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 40658 0.67 0.834901
Target:  5'- aGUACGGUc-UGGCCGccGCCGCgaaGCUGa -3'
miRNA:   3'- -CGUGUCAaaGCUGGUuaCGGCG---UGAC- -5'
17076 3' -50.8 NC_004333.2 + 19626 0.67 0.834901
Target:  5'- aGCGCGG---CGAgCGcgGCCGaCGCUGg -3'
miRNA:   3'- -CGUGUCaaaGCUgGUuaCGGC-GUGAC- -5'
17076 3' -50.8 NC_004333.2 + 30445 0.67 0.825478
Target:  5'- cGCACcaccuGGagUCGGCCAGUcccugucgaagGCCGCGCg- -3'
miRNA:   3'- -CGUG-----UCaaAGCUGGUUA-----------CGGCGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.