Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17076 | 3' | -50.8 | NC_004333.2 | + | 45126 | 0.66 | 0.893802 |
Target: 5'- gGCAUcGUcaacggCGGCCAGcUGCCGUACg- -3' miRNA: 3'- -CGUGuCAaa----GCUGGUU-ACGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 44401 | 0.66 | 0.886204 |
Target: 5'- uGCGCGGUacaaCGGCC--UGCCGgGCUc -3' miRNA: 3'- -CGUGUCAaa--GCUGGuuACGGCgUGAc -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 13884 | 0.66 | 0.870161 |
Target: 5'- cGCGCGaagUCGGCCGGcacggGCUGCGCg- -3' miRNA: 3'- -CGUGUcaaAGCUGGUUa----CGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 3541 | 0.66 | 0.901111 |
Target: 5'- -aGCGGgaUCaACgCGGUGCCGCGCa- -3' miRNA: 3'- cgUGUCaaAGcUG-GUUACGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 9999 | 0.66 | 0.901111 |
Target: 5'- uGCGCGGguugUCGGCCGu--CUGCGCg- -3' miRNA: 3'- -CGUGUCaa--AGCUGGUuacGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 19781 | 0.66 | 0.886204 |
Target: 5'- cGCACGGgaUCGugCcgcgcguugAGUGCgaUGCGCUGc -3' miRNA: 3'- -CGUGUCaaAGCugG---------UUACG--GCGUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 39775 | 0.66 | 0.870161 |
Target: 5'- -uGCAGUggacgaucCGACCGAcGCCGCucgcGCUGu -3' miRNA: 3'- cgUGUCAaa------GCUGGUUaCGGCG----UGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 9960 | 0.66 | 0.86933 |
Target: 5'- cGCGCuugcucgacucggGGUUUCGAUCAGU-CCGCAgaGc -3' miRNA: 3'- -CGUG-------------UCAAAGCUGGUUAcGGCGUgaC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 8963 | 0.66 | 0.886204 |
Target: 5'- aCGCAGc-UCGGCCGAcgggagcgcggGCCGUGCUGc -3' miRNA: 3'- cGUGUCaaAGCUGGUUa----------CGGCGUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 17540 | 0.66 | 0.893802 |
Target: 5'- aGCGCAcgccgCG-CCu-UGCCGCGCUGc -3' miRNA: 3'- -CGUGUcaaa-GCuGGuuACGGCGUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 21959 | 0.66 | 0.901111 |
Target: 5'- uGCGCAGaaaCGACaaacgGCCcGCACUGc -3' miRNA: 3'- -CGUGUCaaaGCUGguua-CGG-CGUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 29872 | 0.67 | 0.844997 |
Target: 5'- cGCGCGGUagucgUCGGCgAAgcgcugcgcgaucggGCCGCGCg- -3' miRNA: 3'- -CGUGUCAa----AGCUGgUUa--------------CGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 16652 | 0.67 | 0.844091 |
Target: 5'- uGCgACAGcacUUCGACCugcccGGUGCUGCACc- -3' miRNA: 3'- -CG-UGUCa--AAGCUGG-----UUACGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 19626 | 0.67 | 0.834901 |
Target: 5'- aGCGCGG---CGAgCGcgGCCGaCGCUGg -3' miRNA: 3'- -CGUGUCaaaGCUgGUuaCGGC-GUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 22619 | 0.67 | 0.825478 |
Target: 5'- uGCGCAGcugaUCG-CCAAUGUCGaccCGCUGa -3' miRNA: 3'- -CGUGUCaa--AGCuGGUUACGGC---GUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 30445 | 0.67 | 0.825478 |
Target: 5'- cGCACcaccuGGagUCGGCCAGUcccugucgaagGCCGCGCg- -3' miRNA: 3'- -CGUG-----UCaaAGCUGGUUA-----------CGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 40658 | 0.67 | 0.834901 |
Target: 5'- aGUACGGUc-UGGCCGccGCCGCgaaGCUGa -3' miRNA: 3'- -CGUGUCAaaGCUGGUuaCGGCG---UGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 24871 | 0.67 | 0.853037 |
Target: 5'- uCGCAGggacgUUGACCAGUGCgCuuaCACUGg -3' miRNA: 3'- cGUGUCaa---AGCUGGUUACG-Gc--GUGAC- -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 3298 | 0.67 | 0.853037 |
Target: 5'- gGCGCAGcgagUCGGgCAGguUGUCGCGCg- -3' miRNA: 3'- -CGUGUCaa--AGCUgGUU--ACGGCGUGac -5' |
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17076 | 3' | -50.8 | NC_004333.2 | + | 31174 | 0.67 | 0.86173 |
Target: 5'- aGCGCGGcgaCGGCguAUGCCGCGa-- -3' miRNA: 3'- -CGUGUCaaaGCUGguUACGGCGUgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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