miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17076 3' -50.8 NC_004333.2 + 12928 1.1 0.001957
Target:  5'- uGCACAGUUUCGACCAAUGCCGCACUGc -3'
miRNA:   3'- -CGUGUCAAAGCUGGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 38572 0.76 0.338773
Target:  5'- uGCGCAac--CGGCCGAUGCCGCGCc- -3'
miRNA:   3'- -CGUGUcaaaGCUGGUUACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 11348 0.74 0.483942
Target:  5'- gGCGCGGUUcgUCGucACCu-UGCCGCGCUc -3'
miRNA:   3'- -CGUGUCAA--AGC--UGGuuACGGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 16886 0.73 0.535309
Target:  5'- gGCGCAGgugCGGCCGgucucgccggcaugGUGCuUGCACUGa -3'
miRNA:   3'- -CGUGUCaaaGCUGGU--------------UACG-GCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 28418 0.72 0.549867
Target:  5'- cGCAacGUgUCGcGCCGGUGUCGCGCUGa -3'
miRNA:   3'- -CGUguCAaAGC-UGGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 18259 0.72 0.572491
Target:  5'- cGCAUGGcaaagCGGCCGAggaUGCCGCGCg- -3'
miRNA:   3'- -CGUGUCaaa--GCUGGUU---ACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 47256 0.72 0.582746
Target:  5'- aGCACAGUcagccgcuccggaUUCGGCUucUGUCGCGCa- -3'
miRNA:   3'- -CGUGUCA-------------AAGCUGGuuACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 31611 0.72 0.595328
Target:  5'- aGCGCcGUcUCGGCCGcugugGCCGCGCg- -3'
miRNA:   3'- -CGUGuCAaAGCUGGUua---CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 19130 0.71 0.606803
Target:  5'- gGCGCGaucGUgggCGGCgCGGUGCuCGCGCUGg -3'
miRNA:   3'- -CGUGU---CAaa-GCUG-GUUACG-GCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 47472 0.71 0.606803
Target:  5'- cGCGCcGg--CGGCgAcUGCCGCGCUGa -3'
miRNA:   3'- -CGUGuCaaaGCUGgUuACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 29960 0.71 0.606803
Target:  5'- aGCGC-GUgcCGAgCGcgGCCGCGCUGc -3'
miRNA:   3'- -CGUGuCAaaGCUgGUuaCGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 23282 0.71 0.652833
Target:  5'- aGC-CAGgucggcaCGACCAGUGUaagCGCACUGg -3'
miRNA:   3'- -CGuGUCaaa----GCUGGUUACG---GCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 25940 0.7 0.682618
Target:  5'- cGCGCGGcgcgaugccggCGGCCAGUacGCgGCGCUGg -3'
miRNA:   3'- -CGUGUCaaa--------GCUGGUUA--CGgCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 2918 0.7 0.687174
Target:  5'- uGCGCAGcggucgUGACCGucaacGUGCCGCugUa -3'
miRNA:   3'- -CGUGUCaaa---GCUGGU-----UACGGCGugAc -5'
17076 3' -50.8 NC_004333.2 + 15319 0.7 0.687174
Target:  5'- gGCGCAacaUCGACCGAcucgagcagGCCGCGCUc -3'
miRNA:   3'- -CGUGUcaaAGCUGGUUa--------CGGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 37962 0.7 0.709801
Target:  5'- cGCGCAGcUUUGauGCCGAcgGCCGCAUg- -3'
miRNA:   3'- -CGUGUCaAAGC--UGGUUa-CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 17209 0.7 0.709801
Target:  5'- uCGCGGg--CGAUCAcUGCCGCuACUGc -3'
miRNA:   3'- cGUGUCaaaGCUGGUuACGGCG-UGAC- -5'
17076 3' -50.8 NC_004333.2 + 10996 0.69 0.720995
Target:  5'- cGCGCGucGUgagCGGCguGUcGCCGCGCUGc -3'
miRNA:   3'- -CGUGU--CAaa-GCUGguUA-CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 15630 0.69 0.720995
Target:  5'- cCGCAGUgaUCGACgCGAgcgcGCCGCGCg- -3'
miRNA:   3'- cGUGUCAa-AGCUG-GUUa---CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 23099 0.69 0.732092
Target:  5'- uGCAuCGGUUgcgUCGGCUGAacgGCgGCACUGa -3'
miRNA:   3'- -CGU-GUCAA---AGCUGGUUa--CGgCGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.