miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17076 3' -50.8 NC_004333.2 + 30445 0.67 0.825478
Target:  5'- cGCACcaccuGGagUCGGCCAGUcccugucgaagGCCGCGCg- -3'
miRNA:   3'- -CGUG-----UCaaAGCUGGUUA-----------CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 22619 0.67 0.825478
Target:  5'- uGCGCAGcugaUCG-CCAAUGUCGaccCGCUGa -3'
miRNA:   3'- -CGUGUCaa--AGCuGGUUACGGC---GUGAC- -5'
17076 3' -50.8 NC_004333.2 + 21020 0.68 0.815832
Target:  5'- uCACGGg--CGACgAAgugGCCGCGCa- -3'
miRNA:   3'- cGUGUCaaaGCUGgUUa--CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 832 0.68 0.815832
Target:  5'- uGCACuucgacUUGACCuuUGCCGCcCUGg -3'
miRNA:   3'- -CGUGucaa--AGCUGGuuACGGCGuGAC- -5'
17076 3' -50.8 NC_004333.2 + 43126 0.68 0.805974
Target:  5'- cGCGCcGacgUCGGCCAAcagccgGCCGC-CUGg -3'
miRNA:   3'- -CGUGuCaa-AGCUGGUUa-----CGGCGuGAC- -5'
17076 3' -50.8 NC_004333.2 + 12618 0.68 0.799964
Target:  5'- uGCGCAG-UUCGcACCGGgccaaguucugaccGCCGCACa- -3'
miRNA:   3'- -CGUGUCaAAGC-UGGUUa-------------CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 15614 0.68 0.795918
Target:  5'- uCACGGUUUCGGCgAacgucGUGCCGUugGCg- -3'
miRNA:   3'- cGUGUCAAAGCUGgU-----UACGGCG--UGac -5'
17076 3' -50.8 NC_004333.2 + 4290 0.68 0.795918
Target:  5'- cGCGCAGUg-CGACaaggauuugCAGUGCCGCGa-- -3'
miRNA:   3'- -CGUGUCAaaGCUG---------GUUACGGCGUgac -5'
17076 3' -50.8 NC_004333.2 + 38658 0.68 0.792864
Target:  5'- gGCACGGgcaagucguacuucgUCGAgCAGcuggccGCCGCGCUGa -3'
miRNA:   3'- -CGUGUCaa-------------AGCUgGUUa-----CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 24828 0.68 0.785675
Target:  5'- uGCAC-GUUgaaguagaccUCGACCGucggcgGCCGCACg- -3'
miRNA:   3'- -CGUGuCAA----------AGCUGGUua----CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 41849 0.68 0.785675
Target:  5'- cGCGCGGUgcggUCGuccUCAcgGCUGCGCa- -3'
miRNA:   3'- -CGUGUCAa---AGCu--GGUuaCGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 28548 0.68 0.785675
Target:  5'- gGC-CAGcgUCGGCCGcgcucGCCGCGCUc -3'
miRNA:   3'- -CGuGUCaaAGCUGGUua---CGGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 45734 0.68 0.78464
Target:  5'- cGCGCAGgugUUCGccgcgccguACCAAggcacgcUGCCGCugUa -3'
miRNA:   3'- -CGUGUCa--AAGC---------UGGUU-------ACGGCGugAc -5'
17076 3' -50.8 NC_004333.2 + 1112 0.68 0.775256
Target:  5'- uCGCAGUcgcgcgCGAagUCGGUGCCGUGCUGc -3'
miRNA:   3'- cGUGUCAaa----GCU--GGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 33842 0.68 0.774205
Target:  5'- cGCGCgucuacaucgaagAGgcggCGAaCGGUGCCGCGCUGa -3'
miRNA:   3'- -CGUG-------------UCaaa-GCUgGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 32675 0.69 0.764676
Target:  5'- aGCACGGUUUCGA-----GCUGCACg- -3'
miRNA:   3'- -CGUGUCAAAGCUgguuaCGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 14678 0.69 0.763609
Target:  5'- cGCGCAGcuugUCGGCCGagugcagGUGUgGCACg- -3'
miRNA:   3'- -CGUGUCaa--AGCUGGU-------UACGgCGUGac -5'
17076 3' -50.8 NC_004333.2 + 23455 0.69 0.751784
Target:  5'- cGUAuCGGggUUGACCGcauuguugucgGCCGCGCUGa -3'
miRNA:   3'- -CGU-GUCaaAGCUGGUua---------CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 41142 0.69 0.743081
Target:  5'- cGCACAGUUcaaacCGACCGAUucGCCGUuugaUGa -3'
miRNA:   3'- -CGUGUCAAa----GCUGGUUA--CGGCGug--AC- -5'
17076 3' -50.8 NC_004333.2 + 21634 0.69 0.743081
Target:  5'- gGCGCGGgcucCGugCAGUucGCCGCAcCUGu -3'
miRNA:   3'- -CGUGUCaaa-GCugGUUA--CGGCGU-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.