miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17076 3' -50.8 NC_004333.2 + 72 0.69 0.743081
Target:  5'- gGCGCGGUgcgcgCGcCCGGuUGCCGC-CUGc -3'
miRNA:   3'- -CGUGUCAaa---GCuGGUU-ACGGCGuGAC- -5'
17076 3' -50.8 NC_004333.2 + 832 0.68 0.815832
Target:  5'- uGCACuucgacUUGACCuuUGCCGCcCUGg -3'
miRNA:   3'- -CGUGucaa--AGCUGGuuACGGCGuGAC- -5'
17076 3' -50.8 NC_004333.2 + 1112 0.68 0.775256
Target:  5'- uCGCAGUcgcgcgCGAagUCGGUGCCGUGCUGc -3'
miRNA:   3'- cGUGUCAaa----GCU--GGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 2918 0.7 0.687174
Target:  5'- uGCGCAGcggucgUGACCGucaacGUGCCGCugUa -3'
miRNA:   3'- -CGUGUCaaa---GCUGGU-----UACGGCGugAc -5'
17076 3' -50.8 NC_004333.2 + 3298 0.67 0.853037
Target:  5'- gGCGCAGcgagUCGGgCAGguUGUCGCGCg- -3'
miRNA:   3'- -CGUGUCaa--AGCUgGUU--ACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 3541 0.66 0.901111
Target:  5'- -aGCGGgaUCaACgCGGUGCCGCGCa- -3'
miRNA:   3'- cgUGUCaaAGcUG-GUUACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 3614 0.67 0.844091
Target:  5'- cGCGuCGGUgUCGAUCAGUG-CGUACUu -3'
miRNA:   3'- -CGU-GUCAaAGCUGGUUACgGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 4290 0.68 0.795918
Target:  5'- cGCGCAGUg-CGACaaggauuugCAGUGCCGCGa-- -3'
miRNA:   3'- -CGUGUCAaaGCUG---------GUUACGGCGUgac -5'
17076 3' -50.8 NC_004333.2 + 8963 0.66 0.886204
Target:  5'- aCGCAGc-UCGGCCGAcgggagcgcggGCCGUGCUGc -3'
miRNA:   3'- cGUGUCaaAGCUGGUUa----------CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 9960 0.66 0.86933
Target:  5'- cGCGCuugcucgacucggGGUUUCGAUCAGU-CCGCAgaGc -3'
miRNA:   3'- -CGUG-------------UCAAAGCUGGUUAcGGCGUgaC- -5'
17076 3' -50.8 NC_004333.2 + 9999 0.66 0.901111
Target:  5'- uGCGCGGguugUCGGCCGu--CUGCGCg- -3'
miRNA:   3'- -CGUGUCaa--AGCUGGUuacGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 10996 0.69 0.720995
Target:  5'- cGCGCGucGUgagCGGCguGUcGCCGCGCUGc -3'
miRNA:   3'- -CGUGU--CAaa-GCUGguUA-CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 11348 0.74 0.483942
Target:  5'- gGCGCGGUUcgUCGucACCu-UGCCGCGCUc -3'
miRNA:   3'- -CGUGUCAA--AGC--UGGuuACGGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 12618 0.68 0.799964
Target:  5'- uGCGCAG-UUCGcACCGGgccaaguucugaccGCCGCACa- -3'
miRNA:   3'- -CGUGUCaAAGC-UGGUUa-------------CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 12928 1.1 0.001957
Target:  5'- uGCACAGUUUCGACCAAUGCCGCACUGc -3'
miRNA:   3'- -CGUGUCAAAGCUGGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 13884 0.66 0.870161
Target:  5'- cGCGCGaagUCGGCCGGcacggGCUGCGCg- -3'
miRNA:   3'- -CGUGUcaaAGCUGGUUa----CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 14678 0.69 0.763609
Target:  5'- cGCGCAGcuugUCGGCCGagugcagGUGUgGCACg- -3'
miRNA:   3'- -CGUGUCaa--AGCUGGU-------UACGgCGUGac -5'
17076 3' -50.8 NC_004333.2 + 15319 0.7 0.687174
Target:  5'- gGCGCAacaUCGACCGAcucgagcagGCCGCGCUc -3'
miRNA:   3'- -CGUGUcaaAGCUGGUUa--------CGGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 15614 0.68 0.795918
Target:  5'- uCACGGUUUCGGCgAacgucGUGCCGUugGCg- -3'
miRNA:   3'- cGUGUCAAAGCUGgU-----UACGGCG--UGac -5'
17076 3' -50.8 NC_004333.2 + 15630 0.69 0.720995
Target:  5'- cCGCAGUgaUCGACgCGAgcgcGCCGCGCg- -3'
miRNA:   3'- cGUGUCAa-AGCUG-GUUa---CGGCGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.